Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1318 ATGTTGGTCACTGAGGACAAGTCCCTTGTTGTTAACATAGAAGATAATGGATGTGAAGGTTGTTGTTCTGATGAGGAACAAAGCTCATCCCAGGATTCTTGTCCTGAGATTGTTGGAGTGTCTGAAAAAGAGAGAAGATCCTCTGTATCAGAGTGTTCAGTGGAGGTGGATCTGGAAGGTACAGTATCTGATGTTAAGGTGCATCTAGCTAAGGTGGAGAGAGATTGTAGGATTTGTCATCTCAGCATGGATATGACCAACCATGAATCTGGCACCCCTATTGAGCTAGGATGTTCTTGCAAAGATGATTTAGCTGCAGCTCATAAACAATGTGCTGAGGCTTGGTTCAAGATCAAGGGTAACAAAACTTGTGAAATCTGCGGATCAATTGCACTCAATGTAGCTGGTGCAAATGAAGTTCAAATGACAGAACAATGGAATGAAGCAAATGATGCCTCAATCATATCACCACCTCCACCAGCACCAACTGTGGAAACTAGAAGTTTCTGGCAGGGACACCGTTTTCTTAATTTCTTGCTAGCATGTATGGTCTTTGCCTTTGTTATATCATGGCTTTTTCACTTCAATGTGCCCTCATGA 600 0.4233 MLVTEDKSLVVNIEDNGCEGCCSDEEQSSSQDSCPEIVGVSEKERRSSVSECSVEVDLEGTVSDVKVHLAKVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIALNVAGANEVQMTEQWNEANDASIISPPPPAPTVETRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1318 199 Pfam RING-variant domain 76 127 IPR011016 GO:0008270
Lan9g1318 199 ProSiteProfiles Zinc finger RING-CH-type profile. 68 134 IPR011016 GO:0008270
Lan9g1318 199 SUPERFAMILY RING/U-box 73 129 - -
Lan9g1318 199 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 199 - -
Lan9g1318 199 SMART ringv_2 75 128 IPR011016 GO:0008270
Lan9g1318 199 PANTHER ZINC FINGER, RING-CH-TYPE 19 199 - -
Lan9g1318 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 136 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1318 Lan-Chr9 20429593 20432322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1318 16 199 C3H Transcription Factor Family AT5G05830 62.703 4.75e-77 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1318 - - gmx:100818979 288.5