Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1296 ATGACATCCCATTGGTGCTATAGGTGTAACAGGTTCGTCAGGTTATGGCGGAACGACATGGTAAGGTGTCCCGATTGCGACAGCGGATTCCTCGAAGAGATTCAAAGTCCAATGCAATCTATGCACGTGGAAAATCGCATCCCAAGGCACCCAAATTCACGCCATTCTCATCATCGTCGACACTGCATAAACATCGTCCATGAACGTTCATCGTTCAACCCTGTAATCATGCTACGTGGCAATGCAGGGTACTCTCAAGGAAGCACAAGCCGTCAGAGAGAAGCAACTACACGTCGTGATTTCGAGCTTTTCTATGGAGATGGTGTTGGTGTTGGTGTAGGTTCTGGTCTTAGACGACCCTTGCCTCCTACCATGTCTGGTTTTATTCTTGATTCTGGACTCGATAGAGTGTTGGAACAGCTTTCTCAGGTAGAGAGCAATGATTTTAGCGGCGGTGAGAGACAAGAAGAGGAAAACCGCCAACGTCCGGCTTCAAAAGAGGCCGTGGATTCCTTGCCGGAAGTAGAGATTGATCACAAACACTTGATCATGGACTCACATTGTGCTGTTTGTAAGGAGCCTTTCCAACTTGGATATGCAGCGAAGGAAATTCCATGCAAGCATATATATCACTCTGAATGCATATTACCATGGCTTGCACTTCGTAATTCTTGTCCAGTTTGTCGCCATGAATTACCCTCAGATGATGATCATCAAGTTGAGAATGAACGCGCTGCACGCGCAATAGGGCAAGAAGAAAACACAGGGTTAACGATTTGGAGGTTACGGGGTGGTGGTTATGCAGTGGGAAGATTTTATGGTGGAAGAAATGGCGATGATGATGAGAGAGAGCTTCCTCTTGTTTACACTGAAATGGATGACGGGTTAAACAACTTTGTTGGTGAACCAAGGAGGATTTCTTGGACGGTGTCACCACCTAGAGGGAGGAAAAGGAATAATGGTAAGTTGCGTAGAATGTTTGGGAATTTGTTTTCTTGCTTCAAAACTAATGATGGTGGAGTTCGAGTTCAGCACTCGAATTCCATCATCCATGATTCTATACCCTTGAGGAGTGATACATCAACTCCTTCTCTACGTTCACGCAGAACTTGGTCTATGGATGTTAACAGTGGAATGAGAGCATGGTGA 1149 0.456 MTSHWCYRCNRFVRLWRNDMVRCPDCDSGFLEEIQSPMQSMHVENRIPRHPNSRHSHHRRHCINIVHERSSFNPVIMLRGNAGYSQGSTSRQREATTRRDFELFYGDGVGVGVGSGLRRPLPPTMSGFILDSGLDRVLEQLSQVESNDFSGGERQEEENRQRPASKEAVDSLPEVEIDHKHLIMDSHCAVCKEPFQLGYAAKEIPCKHIYHSECILPWLALRNSCPVCRHELPSDDDHQVENERAARAIGQEENTGLTIWRLRGGGYAVGRFYGGRNGDDDERELPLVYTEMDDGLNNFVGEPRRISWTVSPPRGRKRNNGKLRRMFGNLFSCFKTNDGGVRVQHSNSIIHDSIPLRSDTSTPSLRSRRTWSMDVNSGMRAW* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1296 382 MobiDBLite consensus disorder prediction 145 170 - -
Lan9g1296 382 SMART ring_2 188 228 IPR001841 -
Lan9g1296 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Lan9g1296 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 324 - -
Lan9g1296 382 Pfam zinc-ribbon 2 34 IPR039525 GO:0061630
Lan9g1296 382 Pfam Protein of unknown function (DUF1117) 256 349 IPR010543 -
Lan9g1296 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 324 - -
Lan9g1296 382 MobiDBLite consensus disorder prediction 150 170 - -
Lan9g1296 382 CDD RING-H2_RNF181 188 232 - -
Lan9g1296 382 SUPERFAMILY RING/U-box 168 236 - -
Lan9g1296 382 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Lan9g1296 382 Pfam Ring finger domain 187 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1296 Lan-Chr9 20262748 20264500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1296 163 248 C3H Transcription Factor Family AT5G15820 54.023 1.89e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1296 - K11982 gmx:100807324 374.4