Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1288 ATGCGTAGGAACAGTCCTGGATACTACAGTCCTCCAAGAAGAAGTTACGGCGGTAGAGGGAGATCACCGCCGCCGCCACCTCCTCCTTCTAGGAGAGGACACGGTGGTGGAGGAGGCAGGCGCAGAGAAAGCAACAATGGAAGCCTTTTGGTGAGGAACATTCCACTCGATTGTCGATCTGAGGAACTTCGAATCCCGTTCGAGAGATTTGGTCCTGTTCGTGATGTCTACATTCCAAAGGACTATTACTCAGGACAACCCCGCGGATTTGCATTCGTGCAGTTTGTGGATGCCTATGATGCATCAGAGGCACAGTACCATATGAACAGACAGATTTTCGCTGGAAGGGAAATATCCGTAGTTGTGGCTGCAGAGACAAGAAAGAGACCAGAGGAGATGCGCCATAGGACTAGTAGGTTCAGAGGATCAGGGAACTATGGGGGGCGAAGGTCTTCACATTATGGGCGTTCTCGATCTCGCTCAATTTCCAGATCTCGCTCACGCTCACCACCTTATCATTCTGGTTCTAGAAACCGATATCACTCAAGGTCCTATTCTCCTGCCCCTAGACGGCATAGTGACTATTCTGTTTCCCCTAGAAGGCCAGTGGAGCACCCAAGATCACCAAGAAGTCCTCCTAGGGAGCGAGATGGTGATCAAAACCGCAGGTCATATTCTCCTGGGGAGCGAGATGGTGATCAAAACCGCAGGTCATATTCTCCAGCTTATGGTAATGGTGCTGATTTGAATCCAAGCAATGGATATGCAGAGAAAGCTGTATACAAGTCTGAGGCTGATCGAGAACAGTGGAAATCAAGTAGAGCATCAAGATCACCCCCTGGATCTAGATCGAGGACTCCTGATTTGTCACCCAGACATGGAAGATGA 888 0.4977 MRRNSPGYYSPPRRSYGGRGRSPPPPPPPSRRGHGGGGGRRRESNNGSLLVRNIPLDCRSEELRIPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRHRTSRFRGSGNYGGRRSSHYGRSRSRSISRSRSRSPPYHSGSRNRYHSRSYSPAPRRHSDYSVSPRRPVEHPRSPRSPPRERDGDQNRRSYSPGERDGDQNRRSYSPAYGNGADLNPSNGYAEKAVYKSEADREQWKSSRASRSPPGSRSRTPDLSPRHGR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1288 295 PANTHER OS02G0252100 PROTEIN 23 285 - -
Lan9g1288 295 SMART rrm1_1 48 121 IPR000504 GO:0003723
Lan9g1288 295 Gene3D - 40 162 IPR012677 -
Lan9g1288 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Lan9g1288 295 MobiDBLite consensus disorder prediction 127 295 - -
Lan9g1288 295 MobiDBLite consensus disorder prediction 1 48 - -
Lan9g1288 295 MobiDBLite consensus disorder prediction 194 236 - -
Lan9g1288 295 MobiDBLite consensus disorder prediction 164 183 - -
Lan9g1288 295 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 285 - -
Lan9g1288 295 SUPERFAMILY RNA-binding domain, RBD 43 152 IPR035979 GO:0003676
Lan9g1288 295 MobiDBLite consensus disorder prediction 18 32 - -
Lan9g1288 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1288 Lan-Chr9 20052477 20055897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1288 28 109 Eukaryotic Initiation Factors Gene Family AT3G11400 37.209 3.19e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1288 K12900 - gmx:100804294 325.479