Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1287 ATGGGTTGCTGCTATAGTGTCAGCAGGATCAAAGCTGAAAGCCCTCCACGAAATGGCACAGGTTTGAGATCAAAAGATGTTAGCAAAGAAGAGGATGGTCTGAGTGGTTTGAGCACCAAGGTCTCCATTCCTTCTGTGCCTCAAACTCCTCGGACCGAGGGTGAGATCTTGAAGTCATCCCATATGAAGAGCTTTGCCTTTAGTGAGCTAAAAACTGCTACACAGAACTTTCGTCCAGATAGTGTGGTCGGCGAAGGTGGGTTTGGTTGTGTGTTCAAGGGGTGGATTGATGAGCAGACACTTGCACCTGTTAGACCAGGGACTGGAATGCTCATTGCTGTGAAGAGGCTTAACCAAGAAGGTTCACAGGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTGCGTCATCCTAATCTTGTGAAACTGATTGGCTACTGCTTAGAGGATGAACATAGACTTTTGGTGTATGAGTTTTTGTCCAAGTGCAGTTTGGATAATCATTTATTTAGGAGGACTTCTTACGTTCAACCACTTTCTTGGAAAATTCGTATGAAGGTTGCCCTCGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGCAAAAGTGATATATCGAGACTTTAAAACATCTAATATCTTGCTCGATTCGAACTATAATGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCTGGTGACCAAAGTCATGTCTCTACAAGGGTAATGGGCACATATGGCTATGCCGCTCCTGAATATATGGCTACAGGTCACTTGACGAAAAAGAGTGATGTATACAGCTTTGGGGTTGTTCTACTAGAAATCATGTCAGGCAAACGCGCCCTAGATAACAACAGGCCATCAGGGGAAAACAATCTTATCGAATGGGCCAAACCTTACCTCAACCGCAAGCGTACGATCTTTCAAGTTATGGATGCCCGAATCGAAGGCCAGTACACGGTGCACGATGCAATGAAAGTGGCTGACCTTGTTATTCAATGCATATCTGTGGAACCAAGATTTAGACCAAAGATGGAAGAGGTGGTAGTAACTTTAGAGCAACTTCAGGATTCCGATAAAAGGAGTGATCATGGCTCAAGCAGCAGTGGCTCAAGCAGTAGTGGCCCTAGACAACATAGAAGAAGATAA 1170 0.447 MGCCYSVSRIKAESPPRNGTGLRSKDVSKEEDGLSGLSTKVSIPSVPQTPRTEGEILKSSHMKSFAFSELKTATQNFRPDSVVGEGGFGCVFKGWIDEQTLAPVRPGTGMLIAVKRLNQEGSQGHSEWLTEINYLGQLRHPNLVKLIGYCLEDEHRLLVYEFLSKCSLDNHLFRRTSYVQPLSWKIRMKVALDAAKGLAFLHSDEAKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPAGDQSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDNNRPSGENNLIEWAKPYLNRKRTIFQVMDARIEGQYTVHDAMKVADLVIQCISVEPRFRPKMEEVVVTLEQLQDSDKRSDHGSSSSGSSSSGPRQHRRR* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1287 389 Pfam Protein tyrosine and serine/threonine kinase 81 358 IPR001245 GO:0004672|GO:0006468
Lan9g1287 389 PANTHER KINASE 1B 28 388 - -
Lan9g1287 389 Gene3D Transferase(Phosphotransferase) domain 1 163 380 - -
Lan9g1287 389 PANTHER OS01G0588500 PROTEIN-RELATED 28 388 - -
Lan9g1287 389 CDD STKc_IRAK 83 362 - -
Lan9g1287 389 SUPERFAMILY Protein kinase-like (PK-like) 51 357 IPR011009 -
Lan9g1287 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Lan9g1287 389 ProSitePatterns Protein kinases ATP-binding region signature. 83 115 IPR017441 GO:0005524
Lan9g1287 389 MobiDBLite consensus disorder prediction 359 389 - -
Lan9g1287 389 Gene3D Phosphorylase Kinase; domain 1 52 162 - -
Lan9g1287 389 MobiDBLite consensus disorder prediction 11 51 - -
Lan9g1287 389 ProSiteProfiles Protein kinase domain profile. 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1287 Lan-Chr9 20048562 20051626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1287 47 359 Glycoside Hydrolase AT3G07070 46.462 2.05e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan9g1287 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1287 - - gmx:100800735 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1091 2 22164317 22167696 Lan9g1287 9 20048562 20051626 LSH
Lan16g0637 16 8162008 8166178 Lan9g1287 9 20048562 20051626 PCT
Lan9g1287 9 20048562 20051626 Lan16g0637 16 8162008 8166178 PCT