Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1280 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGTTTGAAGAAGGGGCCATGGACTGCAGATGAAGACAACAAACTCATCAACTTCATTCTAACCAATGGACAATGTTGTTGGAGAGCTGTTCCTAAGCTAGCAGGCCTGTTGAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGATAAATTATCTGAGGCCAGACTTAAAGAGAGGTCTTCTATCAGAATATGAAGAGAAAATGGTGATTGATCTCCATGCTAAAATTGGCAACAGGTTCTTTCTCCACTTACCATTTTCCTCTGTTTCCCCTGTTCTGCATGCTTAA 315 0.4317 MGRQPCCDKVGLKKGPWTADEDNKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGLLSEYEEKMVIDLHAKIGNRFFLHLPFSSVSPVLHA* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1280 104 Gene3D - 11 67 - -
Lan9g1280 104 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lan9g1280 104 SUPERFAMILY Homeodomain-like 15 89 IPR009057 -
Lan9g1280 104 CDD SANT 16 61 IPR001005 -
Lan9g1280 104 SMART sant 13 63 IPR001005 -
Lan9g1280 104 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 1 89 - -
Lan9g1280 104 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan9g1280 104 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan9g1280 104 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1280 Lan-Chr9 20010758 20012149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1280 1 94 MYB Transcription Factor Family AT1G66230 85.567 1.08e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan9g1280 Myb_DNA-binding 8.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1280 K09422 - sind:105167747 186.422