Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1278 ATGAAGTCTCTTCTCTCTATTTTCTCTCTCTTATTCTTATTCGCCATTATTGCAACCGGAGATGATCTAGCTTCTGACAGAGACGTTCTTTTAATCCTACGCGCCGCCGTGGGTGGCCGTTCACTCCTCTGGAACATAACCCAAACAAGTCCTTGTTTGTGGAACGGTGTGTTCTGCAATGAAAACCGGGTCACTGTGTTGCGGTTTCCGGGTATGGGTCTCTCAGGGAAAATTCCTTTGGGTTTAGGGAACCTTACTCAGTTACAAACCCTTTCTCTCAGGTTCAATGCGTTAACAGGGACAATTCCCTCGGATTTTGCTAAGCTTGTTAACTTGAGGAACCTTTTTCTTAATAATAACCTCTTTTCAGGTGAAATTCCAGATTCTTTGTTCAATTTGAAGAATTTGGTTAAGTTGACTTTGGGCAACAATAATTTCAGTGGTGAGATATCACCAAAGTTTAATGACCTCACTCGTTTGGATACACTCCTTTTTGAGAATAATAATTTTAGTGGCTCAGTTCCTGATCTTAATGTTCCATCTCTTCAGAGTTTCAATGTTTCAAATAATCACTTAAATGGGTCAATTCCTAAGAGATTCTCAGATTTTTCTGTGAGTGCTTTTGCTGGGAATTCACTTTGTGGAAAGCCCTTGCAACCTTGCCCTGGTACTGAGAGTGGAAAAAACTCAAAAAAGAAATTGTCTGGAGGGGCAATTGCAGGAATTGTGATTGGTTCTTCGATTGGTGTGTTATTGATTCTGCTGCTTTTATTCTTATTGTGTAGAAAAGTGAGTGGTAAAAATGATTCCAACGACGTTGTACCTTCAAAGCAGGTTGAGGCTGTTGCGCCACGTGAGAAGAGTGGTAATGATAGTAATTCAGTTGTTGCAGCAGCAAAAAATGATTTTAAGAATGGTAATAGTTTGGTTTTCTTTAGCAATGTGAATAAGCCTTTTGAACTTGAGGAATTGCTGAGTGCTTCAGCTGAAGTGTTGGGGAAGGGGACTTTTGGAACCACTTATAAGGCCACTATTAATATGGGAATGAGTGTGGCAGTGAAGAGATTGAAGGAAGTTACTGCACCAGAAAATGAATTCAGACAGAAAATTGAGCAAGTGGGTAAAATGGCTCATGTGAACTTGGTTCCATTCAGAGCTTATTATTTTAGCAGAGATGAAAAACTTATTTTGAATGATTACATGCCAATGGGAAGCTTATCTGCCCTCTTACATGCAAATAGTGGAGCTGGCAGGACACCATTGAATTGGGAAACAAGGTCTGGCATTGCCCTTGGTGCTGCTCGTGGGGTTGCATACCTACATTCGCACGGTCCAACATCCTCCCATGGAAATATCACCTCGTCAAATATCCTTCTCACCAAATCTTACGAAGCTCGTGTTTCTGACTTCGGCCTTGCTTATACTGCACTCCCAACCTTTACACCTAACCGTGTATCTGGTTACCGTGCCCCAGAGGTCACGGATGCTGGCAAAGTATCCCAAAAAGCTGATGTCTATAGCTTTGGCATAATGCTTTTGGAGCTGCTTACAGGGAAGGCTCCTACTCATTCTTCACTGAATGAAGAAGGGGTAGACCTTCCAAGATGGGTCCAAACAGTGGTTCAGGAGGAATGGAGCAACGAGGTTTTCGACATGGAGCTTCTGAGATACCAGAATGTTGAGGAGGAAATGGTCAAGCTCTTGCAGCTTGCAATTGAATGTACTGCTCAATATCCTGACAAAAGACCTTCCATGAATGTGGTGGAAAGCAGGATTCAGGAAATTTGTAATTCTAGCTTAGAGAAAGAGAGACTTTCCGAAAAGTACTACCCTGCTGAATCCGTTGCGCCGCAAGATTGA 1860 0.422 MKSLLSIFSLLFLFAIIATGDDLASDRDVLLILRAAVGGRSLLWNITQTSPCLWNGVFCNENRVTVLRFPGMGLSGKIPLGLGNLTQLQTLSLRFNALTGTIPSDFAKLVNLRNLFLNNNLFSGEIPDSLFNLKNLVKLTLGNNNFSGEISPKFNDLTRLDTLLFENNNFSGSVPDLNVPSLQSFNVSNNHLNGSIPKRFSDFSVSAFAGNSLCGKPLQPCPGTESGKNSKKKLSGGAIAGIVIGSSIGVLLILLLLFLLCRKVSGKNDSNDVVPSKQVEAVAPREKSGNDSNSVVAAAKNDFKNGNSLVFFSNVNKPFELEELLSASAEVLGKGTFGTTYKATINMGMSVAVKRLKEVTAPENEFRQKIEQVGKMAHVNLVPFRAYYFSRDEKLILNDYMPMGSLSALLHANSGAGRTPLNWETRSGIALGAARGVAYLHSHGPTSSHGNITSSNILLTKSYEARVSDFGLAYTALPTFTPNRVSGYRAPEVTDAGKVSQKADVYSFGIMLLELLTGKAPTHSSLNEEGVDLPRWVQTVVQEEWSNEVFDMELLRYQNVEEEMVKLLQLAIECTAQYPDKRPSMNVVESRIQEICNSSLEKERLSEKYYPAESVAPQD* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1278 619 MobiDBLite consensus disorder prediction 268 293 - -
Lan9g1278 619 SUPERFAMILY Protein kinase-like (PK-like) 330 589 IPR011009 -
Lan9g1278 619 SUPERFAMILY L domain-like 44 203 - -
Lan9g1278 619 PANTHER OS05G0588300 PROTEIN 4 601 - -
Lan9g1278 619 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Lan9g1278 619 Gene3D Phosphorylase Kinase; domain 1 291 400 - -
Lan9g1278 619 PANTHER INACTIVE RECEPTOR KINASE-RELATED 4 601 - -
Lan9g1278 619 Pfam Protein tyrosine and serine/threonine kinase 330 590 IPR001245 GO:0004672|GO:0006468
Lan9g1278 619 Gene3D Ribonuclease Inhibitor 24 177 IPR032675 -
Lan9g1278 619 ProSiteProfiles Protein kinase domain profile. 326 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1278 619 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Lan9g1278 619 Gene3D Ribonuclease Inhibitor 181 221 IPR032675 -
Lan9g1278 619 Gene3D Transferase(Phosphotransferase) domain 1 401 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1278 Lan-Chr9 19991901 19995212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1278 22 595 Receptor kinase-like Gene Family AT1G48480 56.536 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lan9g1278 PK_Tyr_Ser-Thr 6.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1278 - - aprc:113846223 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1080 2 22047667 22050729 Lan9g1278 9 19991901 19995212 LSH
Lan11g0310 11 2017201 2020052 Lan9g1278 9 19991901 19995212 LSH