Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1274 ATGAAGGAGAAGAATAGGGAGAAGGAGAGGGAGGAGGAAGGGGAGCTTGAAACGTCGTCGTTGGATGAGAGAGAGTACGAGATTCAGGATCTGAGGGAAAGGTTGAAATCTTCAGGAGTGAGTCGATTCAATTTGATAGAGAAAGAGTTGAGTTGGAGAAGAAAGTTCAGTCGCGAATCCCTTCTTGCTGGATTCAAAGACTTTGTTATCCTTCCTCATCACTGGTGGTATAGGGCATGGTCATCATTCATATTGTTATGGGCAGTGTACTCATCCTTAATTACTCCAATGGAGTTTGGATTTTTTCGTGGCCTACCTGAACATCTCTTTCTACTGGACTTCATTGGACAAATAGCTTTTCTTGTTGACATTGTTTTGCAGTTCTTTGTTGCTTATAGAGACAGTCAGACATATCGTATGGTCTACAAGCGTGCCCCTATTGCTCTCAGGTATCTAAAATCTAGCTTTGTCTTTGATTTACTAGGATGTATGCCTTGGGACATCATCTACAAGGCTTCTGGAAAAAAAGAGGAAGTGAGATACCTTTTATGGATAAGACTATATCGGGTGCGGAAACTCCATGATTTTTTATACAAGTTGGAGAAAGATATACGTATCAATTACATTATAACTCGAATCATGAAACTTATAGTAGTTGAACTTTACTGCACCCACACAGCAGCATGCATTTTCTACTATTTGGCTACTACACTACCTGAATCTCAAGAGGGGTACACATGGATTGGAAGTTTGAAAATGGGTGATTTTAGTTATTCACATTTCAGAGACATTGATCTTGGCAAGCGCTACATGACATCCTTGTATTTTGCTATTGTTACTATGACTACTGTTGGCTATGGAGATATACATGCAGTAAATATGAGGGAGATGTTATTCGTAATGATATATGTTTCATTTGACATGATTCTTGGTGCTTATTTGATTGGTAACATGACAGCTTTGATAGTAAAGGGATCAAAGACTGAAAAGTTTAGGGATAAGATGACAGATCTTATGAAATATATGAACAGAAATAGACTTGGAAGGGATATTTGTGAACAAATAAAAGGCCATTTTCGCTTACAGTATGAGAGTAGTTACACTAATGCTGCTGCCATTCAAGAAATCCCCATTTCTATTCGATCTAAGATATCTCAAACGTTATATTTGCCATACATTGAAAAGGTTCCACTTTTTAGGGGCTGCTCTTCAGAATTCATCAGCCAGATTATTATTAGGCTCCATGAGGAGTTCTTTCTTCCCGGGGAAGTTATCATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGAGTGCTGGAGGAAGTAGGCACAGCTGAAGATGGATCTGAAGAAACTGTTTCATTTCTTCGACGCAACAGCTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTTCGCGTTTGTGAACTGTGTAGGCTTGTGCGGCTTGATAAACAATCATTTACAAATGTCTTAGATATATACTTTTATGATGGAAGGAAAGTACTAAACAACCTTCTAGAGGGAAAAGAGTCTTTTCGAGGTAAGCAATTGGAGTCGGACATCACATTTCATATCGGAAAGCAAGAAGCTGAACTTGCTTTGAAGGTCAATAGTGCAGCTTTTCACGGGGATCTGTATCAGCTAAAAGGTTTGATTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCATCTAGAGGATATGAAGATATCACACTTTTCCTTATTCAAGAAGGTGTAGACATCAATCTTAGAGATAACTTTGGAAACACATCCTTGCTTGAGGCAGTTAAGAATGGACATGACCGGGTTGCTTCTTTACTTGTTAGAGAAGGGGCTTCTATGAAGTTAGAAAATGCTAGTAGTTTTCTATGTACCGCAGTTGCGAGGGGAGATTCAGATTACCTTAAAAGGCTTTTGTCTAATGGCATGGATCCTAACTTGAAAGATTATGATTACCGAAGCCCTCTTCACATTGCTGCAGCTGAAGGTTTATACTTCATGGCGAAGTTGCTATTAGAAGCCGGAGCTAGCGTTTTTGCCAAAGACAGATGGGGAAATACCCCACTTGATGAAGCTCGAATGAGCGGAAATAAGAATCTGATCAAGCTACTTGAAGATGCAAAATCTGCTCAGTTGTCAGAATTTCCATGTCGTTCCGAAGAATTTACAGATAAAATGCACCCAAAGAAATGCACAGTGTTCCCTTTCCACCCATGGGATCCAAAAGAACATAGAAGACATGGGATTGTGTTATGGATTCCACACACCATTGAAGAGCTAATCAAAACAGCAGCAGAGAAGATGGAATTATCCACTGATTCTTGTATTTTATCAGAAGATGCTGGTAAAATTACTGATGTGGACATGATTAAAGATGGTCAGAAGCTGTATTTGGTTCCTGAAACACCTTAG 2472 0.3932 MKEKNREKEREEEGELETSSLDEREYEIQDLRERLKSSGVSRFNLIEKELSWRRKFSRESLLAGFKDFVILPHHWWYRAWSSFILLWAVYSSLITPMEFGFFRGLPEHLFLLDFIGQIAFLVDIVLQFFVAYRDSQTYRMVYKRAPIALRYLKSSFVFDLLGCMPWDIIYKASGKKEEVRYLLWIRLYRVRKLHDFLYKLEKDIRINYIITRIMKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKMGDFSYSHFRDIDLGKRYMTSLYFAIVTMTTVGYGDIHAVNMREMLFVMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDICEQIKGHFRLQYESSYTNAAAIQEIPISIRSKISQTLYLPYIEKVPLFRGCSSEFISQIIIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGTAEDGSEETVSFLRRNSSFGEISILCNIPQPYTVRVCELCRLVRLDKQSFTNVLDIYFYDGRKVLNNLLEGKESFRGKQLESDITFHIGKQEAELALKVNSAAFHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQEGVDINLRDNFGNTSLLEAVKNGHDRVASLLVREGASMKLENASSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHIAAAEGLYFMAKLLLEAGASVFAKDRWGNTPLDEARMSGNKNLIKLLEDAKSAQLSEFPCRSEEFTDKMHPKKCTVFPFHPWDPKEHRRHGIVLWIPHTIEELIKTAAEKMELSTDSCILSEDAGKITDVDMIKDGQKLYLVPETP* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1274 823 Pfam Ankyrin repeats (3 copies) 549 636 IPR002110 GO:0005515
Lan9g1274 823 Pfam Ankyrin repeats (3 copies) 644 725 IPR002110 GO:0005515
Lan9g1274 823 ProSiteProfiles cAMP/cGMP binding motif profile. 398 518 IPR000595 -
Lan9g1274 823 SUPERFAMILY Ankyrin repeat 547 726 IPR036770 -
Lan9g1274 823 ProSiteProfiles KHA domain profile. 750 823 IPR021789 -
Lan9g1274 823 SMART ANK_2a 638 667 IPR002110 GO:0005515
Lan9g1274 823 SMART ANK_2a 704 734 IPR002110 GO:0005515
Lan9g1274 823 SMART ANK_2a 671 700 IPR002110 GO:0005515
Lan9g1274 823 SMART ANK_2a 574 603 IPR002110 GO:0005515
Lan9g1274 823 SMART ANK_2a 607 636 IPR002110 GO:0005515
Lan9g1274 823 Pfam Cyclic nucleotide-binding domain 418 502 IPR000595 -
Lan9g1274 823 Gene3D - 638 734 IPR036770 -
Lan9g1274 823 SMART cnmp_10 398 516 IPR000595 -
Lan9g1274 823 SUPERFAMILY cAMP-binding domain-like 326 515 IPR018490 -
Lan9g1274 823 PRINTS EAG/ELK/ERG potassium channel family signature 113 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan9g1274 823 PRINTS EAG/ELK/ERG potassium channel family signature 222 232 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan9g1274 823 PRINTS EAG/ELK/ERG potassium channel family signature 270 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan9g1274 823 PRINTS EAG/ELK/ERG potassium channel family signature 314 323 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan9g1274 823 PANTHER POTASSIUM CHANNEL SKOR-LIKE 10 822 - -
Lan9g1274 823 Gene3D - 77 324 - -
Lan9g1274 823 ProSiteProfiles Ankyrin repeat region circular profile. 607 638 - -
Lan9g1274 823 MobiDBLite consensus disorder prediction 1 22 - -
Lan9g1274 823 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Lan9g1274 823 PANTHER POTASSIUM CHANNEL AKT1 10 822 IPR045319 GO:0005249|GO:0006813
Lan9g1274 823 ProSiteProfiles Ankyrin repeat region circular profile. 671 703 - -
Lan9g1274 823 Pfam Ion transport protein 78 323 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lan9g1274 823 Gene3D - 531 637 IPR036770 -
Lan9g1274 823 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Lan9g1274 823 PRINTS Ankyrin repeat signature 575 590 IPR002110 GO:0005515
Lan9g1274 823 PRINTS Ankyrin repeat signature 687 701 IPR002110 GO:0005515
Lan9g1274 823 Gene3D Jelly Rolls 356 525 IPR014710 -
Lan9g1274 823 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Lan9g1274 823 ProSiteProfiles Ankyrin repeat region circular profile. 574 606 - -
Lan9g1274 823 SUPERFAMILY Voltage-gated potassium channels 72 323 - -
Lan9g1274 823 CDD CAP_ED 398 512 IPR000595 -
Lan9g1274 823 Pfam KHA, dimerisation domain of potassium ion channel 749 818 IPR021789 -
Lan9g1274 823 ProSiteProfiles Ankyrin repeat profile. 638 670 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1274 Lan-Chr9 19963549 19969772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1274 645 724 Ion Channels AT5G37500 35.294 5.78e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1274 K21867 - gmx:100814385 1427.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0316 11 2064405 2074736 Lan9g1274 9 19963549 19969772 LSH