Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1273 ATGTCTTTCTCTCTCACTGAACCATGCAAGAAGAGAAAACTACGAAACCCAAAAGTGTTCAGGTTCAACTCTTTCCCTGTCACATTCTCTGGTCCTTTCCGTGAAAATGTTCGACTCTTTCTTCAAGAATGTGGAGATCTCGATGATTACACTGTGCTTGGTAACCCTCTCTGTTGCACTCTTCTCGTTCACAACAACACTAACCTCATGGCTCCTCTCTACACTCTCGAAGAAGATGTCTATCACTCTTCACACCCTTTCTGTCACTATTGTCGCTCTGCTGGTTGGAGTGGCCATTTTGTAACAAAGAGAAGATACCATTTCATAATCCCAATGGACAGTGGGTGGCATAAACCCTTAGATGATAGTGCTTTTGATAATCAGAGCCATCTTTTGCATGGTGTGATTCACTGCAATGGCTGTGGTCATTTGATTTGCATTAATGGCTATGAAGGGGGTTCCAAAGTGCTAAGTGGCAGAGAAATCATGGATCTATGGGACAGGATTTGCACAAACCTTAAAGCAAGGAGAATTTCAGTGGAAGATGTTTCAAGGAAGAGGTCTATGGATCTTCGCCTTCTTCATGGAGTTGCATATGGCCACTCTTGGTTTGGTAGGTGGGGTTATAGATTTTTTCGTGGAAGCTTTGGGGTGACAGAGAAAAACTACTACGAAGCAATTGAATCTCTTGGTTCTTTGGAGCTTGATGAGATTGCAAGAGATTTGAGCAAGGCAAAGCACGGCAAGGAAATGAAACAAATGATTCAGTGCTATAGAGATATGAGTGACACTCCGATTACCACTATAAGGGATCTTCTCAGGTTCATGCTTACTGTTAAGCCTCGTGCTCCTGTGACTAAGATAACAGTCACATGTTCTGTTCCTTCATCATTCAACTCAAGGAATTCAACCAGACATGCACTCTCAAACAGAACAAATCTAATGAAGGAGAAATCTGTGAGGTACAAGAAGTTCAACGCCATAGTAGCTAACATGGATAGCAGGTGGCCTAAAAGGAGATTAGAATTTGCAGCACAAGTGATAGTAGATGCATTGAATGAGCACAAGGGTATGAAATCAGGTTCGGGTGGAATGACAAGGCAAGATGTGCGAGATGCAGCTAGGCTTCACATTGGTGACACAGGCTTACTTGATTATGTGCTGAAATCACTGAACAATGTGATTGTTGGAAATCATGTGGTCCGTCGCATGGTGAATCCTTACACTAGGATCCTTGAATATACAATTCATGAGATTGGCAATGGGATTAAAGAACCTGAAATGGAGCCTGAGGTAATGGCTCATGTATATCCCAGAGTAGAGTCATGCCGTAGGCCTAGTTTTGATGTTAGTAATGATGTACTATATGTGTACAAGAATGTGCTACTAGGGTATCCAGATTCAGAACAAGTGGACATGGCAGTTCAGAGAATTCTTGACAGTAGACACTTTGTGAAAGAGTTTGGACTAATGGATGAAATGGAGCAGGTATTGACATTCATTTGCAAGCTGAAACCAAATGTTGGTGACACTAAATATGAATTGAGAGAAGCAGGTTGTAGTGTGATTGTTATGGTTCCATTGCATGCAACTGTTGGAGACTTGAAGAAAGCTGTTGAGGCTGCACTGAGGGACACATACTGCACAGCAGAAAGGGTTATAGTGACAGACTTTGGAGAATTGATGGGAGTGAGTGATGAGGAAGTGCTTTTTGGACTAATACAATCAGGTATGGAACTTTGTGTGAGGGGGATTTCTATTGATTTGTTTACTCCATTGAAGTATCAGGGTGGAGCAGATAATTGGAAAGTGAGGTGTGAATGTGGAGCTGAAGATGATGATGGGGAGAGAATGGTGGCATGTGACATTTGTGAGGTGTGGCAGCATACAAGATGCTGTGGCATTGATGATTCTGAGACAGTGCCACCATTGTTTGTATGCACTGGATGTTGTGATTCAGTTGCACCTGCATGTATTGAATCTGATATTGATATGGATTGTGTTGATAGTTATGTGATTTCACCACAGCCAACACAGTTACTGGAATATGGATATGGCTACTGA 2064 0.4215 MSFSLTEPCKKRKLRNPKVFRFNSFPVTFSGPFRENVRLFLQECGDLDDYTVLGNPLCCTLLVHNNTNLMAPLYTLEEDVYHSSHPFCHYCRSAGWSGHFVTKRRYHFIIPMDSGWHKPLDDSAFDNQSHLLHGVIHCNGCGHLICINGYEGGSKVLSGREIMDLWDRICTNLKARRISVEDVSRKRSMDLRLLHGVAYGHSWFGRWGYRFFRGSFGVTEKNYYEAIESLGSLELDEIARDLSKAKHGKEMKQMIQCYRDMSDTPITTIRDLLRFMLTVKPRAPVTKITVTCSVPSSFNSRNSTRHALSNRTNLMKEKSVRYKKFNAIVANMDSRWPKRRLEFAAQVIVDALNEHKGMKSGSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNHVVRRMVNPYTRILEYTIHEIGNGIKEPEMEPEVMAHVYPRVESCRRPSFDVSNDVLYVYKNVLLGYPDSEQVDMAVQRILDSRHFVKEFGLMDEMEQVLTFICKLKPNVGDTKYELREAGCSVIVMVPLHATVGDLKKAVEAALRDTYCTAERVIVTDFGELMGVSDEEVLFGLIQSGMELCVRGISIDLFTPLKYQGGADNWKVRCECGAEDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSVAPACIESDIDMDCVDSYVISPQPTQLLEYGYGY* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1273 687 ProSitePatterns Zinc finger PHD-type signature. 606 650 IPR019786 -
Lan9g1273 687 CDD PHD_MMD1_like 606 650 - -
Lan9g1273 687 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 11 657 - -
Lan9g1273 687 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 11 657 - -
Lan9g1273 687 SUPERFAMILY FYVE/PHD zinc finger 592 653 IPR011011 -
Lan9g1273 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 656 IPR013083 -
Lan9g1273 687 SMART PHD_3 605 651 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1273 Lan-Chr9 19957581 19960470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1273 10 656 PHD Transcription Factor Family AT5G22260 32.532 4.93e-112 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan9g1273 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1273 - - gmx:100797388 1014.6