Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1270 ATGGTTTTGTCTTGGACTAAAGGAAGAGTTTTTCGCCGTGCCCGGAAAGGAAAAGACCTTAATTCCGTTGGTGACTTGGATGTGGAGATTTCAACACCCACTCATTTTCGATGTCCCATCACACTAGACATGATGAAAGACCCTGTAACATTGTCTACAGGGATAACCTACGATCGTGATAGCATCGAGAAATGGTTCGAAGATGGAAACAACACGTGCCCAGTAACCAAAAGAATCCTCACAACCTTTGACATGATTCCAAACCATGCCTTGAGGAAGATGATTCAAGATTGGTGTTCAGAACACCGTTCTTTTGGGATAGAAAGGATCCCAACTCCTCGTATACCCGTGACACCGTACCAGGTTTCAGATACGTGTACGAGGATCATGTCTTGTGCACAACGTGGTGATGTAAACAAGTGTTTGGAATTGGTGAGAAAGATGAAGGCTTGGGGGAAAGAGAGTGAGCGAAACAAGAGGTGCATAATCACTAGTGCTGCTTCTGTTGTGCTTGCTAAGGTCTTTGACCTTTTCTCATCATGTGGTGGATCCAATATTGAGAAAAGCAACGTTGGAATTGTCTTGGAAGAGATTTTGGGTGTGTTGACATGGATGCGCCCTTTTTCACAACAAGGTAAATCAATTTTAGGGTCATTGAGTTCCATGAATTGTATGGTTTTGTTCCTAAATGGTAAAGACCTTTCTTCAAGACAAAGTGCTGTTTTATTGCTCAAAGAAATGAACCTTGAGGCATTGGAAAAAACTGAAGGAGTTATTGAAGGTTTGGTTAAGATGATTAAGGAGCCTATTGGACATGCTGCTGCTACCAAAGCATGTTTGTCAATAATTTTCAACATGGTTTCTTCATCTAAGAATACAGAAGTAATAGCACAAAGATTTGTGGAATTGGGTTTGGTTTCAATTTTATTGGAAGAGCTTGTTGATGCTGAAAGAGGAGTGTGTGAGAAGGCTTTGGGGGTGCTTGATTGCATTTGTGACTGCAAACAAGGAAAAGAAATAGCTAAGTCAAATGCTTTGACTTTGCCTCTAGTGATTAAGAAACTTTTGAGGGTGTCTGATTTGAGTTCTAGTTTTGCAGTTTCTATTGTTTGGAAACTTTGTGTTAAGACAGAAGAAAGGTTATTGATTGAGGTGCTTCAAGTTGGGGTGTTTCAGAAACTACTAGTTATGTTGCAAGTGGGTTGTGGTGATAGCACAAAAGAGAAAGCTACTGAGTTGTTGAAATTGTTGAATGGTTATAGGAGCAAAGCAGAATGTGTTGATTCTTCATCATTGGATTTTAAGCACCTTAAGAAGCCATTCTAA 1326 0.4012 MVLSWTKGRVFRRARKGKDLNSVGDLDVEISTPTHFRCPITLDMMKDPVTLSTGITYDRDSIEKWFEDGNNTCPVTKRILTTFDMIPNHALRKMIQDWCSEHRSFGIERIPTPRIPVTPYQVSDTCTRIMSCAQRGDVNKCLELVRKMKAWGKESERNKRCIITSAASVVLAKVFDLFSSCGGSNIEKSNVGIVLEEILGVLTWMRPFSQQGKSILGSLSSMNCMVLFLNGKDLSSRQSAVLLLKEMNLEALEKTEGVIEGLVKMIKEPIGHAAATKACLSIIFNMVSSSKNTEVIAQRFVELGLVSILLEELVDAERGVCEKALGVLDCICDCKQGKEIAKSNALTLPLVIKKLLRVSDLSSSFAVSIVWKLCVKTEERLLIEVLQVGVFQKLLVMLQVGCGDSTKEKATELLKLLNGYRSKAECVDSSSLDFKHLKKPF* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1270 441 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
Lan9g1270 441 CDD RING-Ubox_PUB 36 77 IPR045210 -
Lan9g1270 441 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Lan9g1270 441 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 441 - -
Lan9g1270 441 PANTHER WDSAM1 PROTEIN 7 441 IPR045185 GO:0061630
Lan9g1270 441 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Lan9g1270 441 Gene3D - 140 432 IPR011989 -
Lan9g1270 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 107 IPR013083 -
Lan9g1270 441 SUPERFAMILY ARM repeat 216 421 IPR016024 -
Lan9g1270 441 SUPERFAMILY RING/U-box 29 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1270 Lan-Chr9 19946663 19948222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1270 29 441 U-box Gene Family AT5G37490 44.418 1.85e-116 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1270 - - gmx:100795913 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1078 2 22029777 22031367 Lan9g1270 9 19946663 19948222 LSH
Lan11g0321 11 2093647 2095277 Lan9g1270 9 19946663 19948222 LSH