Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1267 ATGCCAACAACAGCATCACCTGATCTTTCTCTTCACATAAGCCTTCCAAGCACCTCTACCTCTTGCAATAACACTAATGCTATAACTAATTATGAATCCCTTTCCACTACAACTGTGTCTCAAGCCCACACAGAACTCTCTCTTGGAAGAAATTTCACATCTTCAGAGGAAACTCCACAAAACCCTTATTACCAAAACCAAACTCATTTCAATCATCTTCATCACAACAAAAGTACTACTACAACTACTACAACTACTACTACTGCTACTACTACAAGTACTAACACTCCCTTGAATCATATAAACTATGATGTACCATTAGATGGGTTGAGACCAATCAAGGGGATTCCAGTGTATCACAACCGTTCATTCCCTTTCTTGCCTATGGACCACTCAAGAGATTATCACAAAGATCAACAACATCATCATCAACAACAACAACAACAACTACAACAAAATATGTGCTTATATCATCATGTACCTTCTTATCCTTCTTTGTCTTCTTCTTGTCCATCGCCTTCGCCCTACTTCACGGGGCCAGGTTTGGATCCCATGTCTCTAAGAGCAGCCACTGCAGCTGCTACAAGGTTTAATGGGATTTGTGGTGGTGATGCTTTCAAATCTCTCCCATCATTGCACCAACATCACTCACAGTTTGGGATTTCCCCTAACTTAGAGCAATCTTCTGGGTTGATGAGATCAAGGTTTTTGCCTAAACTTCCTATCAAGAGGAGCATGAGAGCACCAAGAATGAGATGGACAAGCTCCCTCCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTTACATTAGCTCATGTGAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAGCCTATTGCTTCTTCAGGGCATTCAGATGGATCAGGAGAGGATGACATGTCTCCAATAGGCAGCAGTGTCGACCGAGGCGGCGGTCTTAGTCAATTTCCCGACCACCAAAGAGGGCTGCCGGATCAGCCAGTTCAACAAGATATGGATTACACTTCTACCACTCCTACTCTTTGGAGTAATTCCTCAAGTTATAGAGAGCCATGGCAAACTACTACTAAAGATATTGATGGTATCAGACCGCCAACTCTACGGTCACAAACAAGACCCAGAGTTCTCCAAAATCAGGAATGTGATTCAATCAACCTCAGAAACACTTTGGGAGGATCTAATTTGGAGTGCAATAAGATTAATCCAAACTTGGAGTTCACATTAGGTAGACCAGATTGGAATGGCAAACAAAAGTCCTAA 1332 0.4234 MPTTASPDLSLHISLPSTSTSCNNTNAITNYESLSTTTVSQAHTELSLGRNFTSSEETPQNPYYQNQTHFNHLHHNKSTTTTTTTTTTATTTSTNTPLNHINYDVPLDGLRPIKGIPVYHNRSFPFLPMDHSRDYHKDQQHHHQQQQQQLQQNMCLYHHVPSYPSLSSSCPSPSPYFTGPGLDPMSLRAATAAATRFNGICGGDAFKSLPSLHQHHSQFGISPNLEQSSGLMRSRFLPKLPIKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPIASSGHSDGSGEDDMSPIGSSVDRGGGLSQFPDHQRGLPDQPVQQDMDYTSTTPTLWSNSSSYREPWQTTTKDIDGIRPPTLRSQTRPRVLQNQECDSINLRNTLGGSNLECNKINPNLEFTLGRPDWNGKQKS* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1267 443 MobiDBLite consensus disorder prediction 305 396 - -
Lan9g1267 443 Gene3D - 248 305 - -
Lan9g1267 443 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 5 441 - -
Lan9g1267 443 MobiDBLite consensus disorder prediction 353 378 - -
Lan9g1267 443 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 441 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lan9g1267 443 SUPERFAMILY Homeodomain-like 246 302 IPR009057 -
Lan9g1267 443 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 249 302 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1267 Lan-Chr9 19926788 19931668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1267 111 440 G2-like Transcription Factor Family AT5G16560 46.110 2.92e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan9g1267 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1267 - - lang:109359351 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0328 11 2351569 2355648 Lan9g1267 9 19926788 19931668 LSH
Lan4g0223 4 3654084 3659925 Lan9g1267 9 19926788 19931668 PCT
Lan16g0598 16 7358420 7368066 Lan9g1267 9 19926788 19931668 PCT
Lan9g1267 9 19926788 19931668 Lan4g0223 4 3654084 3659925 PCT
Lan9g1267 9 19926788 19931668 Lan16g0598 16 7358420 7368066 PCT