Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1259 ATGATATCTTATTCCTTGCATATCATTTCAGGGCAGCCAAAACGGCACCTTCTTACAACAGGATGGAGTGTATTTGTTAGTGCAAAAAGGCTTGTTGCTGGAGATTCTGTACTTTTCATATGGAATGAAAAAAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGGCCACAAACTGTGATGCCATCGTCAGTTCTATCAAGTGATAGTATGCACATTGGGCTTCTTGCTGCTGCTGCCCATGCTGCAGCAACCAATAGCTGCTTTACAGTGTTCTATAATCCAAGGGCTAGCCCATCCGAGTTCGTCATTCCACTATCAAAATATATTAAAGCCGTGTACCATACACGTGTTTCTGTTGGCATGCGCTTTAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGTAGGTACATGGGTACTATAACTGGCATAAGTGACTTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGATCAGTCAAGGTTGGTTGGGATGAATCCACAGCAGGAGAGAGACAGCCACGGGTGTCATTGTGGGAAATTGAGCCTTTAACAACATTTCCGATGTATCCATCACTATTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGCTCCTCATCTTTTCTTGATGGCAGAGACGAGACAACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGGAGACCAAGGAGTCAATTCTCTAAACTTTCAAGGTGCCGGTTTGTTTCCGTGGATGCAGCAGAGGCTGGATCCAACTATGCTTGGAAATGATCAGAATCAGCAGTATCAAGCCATGTCAGCAGCAGCTGGTTTGCAGAACTTAGGAAGCGGAGATCTCTTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCTATCTTCAACAATCAGGAAACTCTAACCCTCCGTTGCAGCTTCAGAAGCAACAAGTGATTCAGCAATCAGTGTCTCCTAATATTCTGCAACCACAAGCCCAAGTATTGACTGAGAACCTGTCGCAGCAGCTCCTTCTGAAACCACCAATCAATCGAGAAGACCAGGCACAGCAGCAGCAACACACTTATCAAGATTCACTTTTAATTCAAACTGAACAGCTCCATCAGAGGCAACACTCTAATCTGCCTTCACCATCATATTCAAAACCGGATTTCTTTGATTCAAGCATGAAGTTATCTGCTGCTTCAGTTTCGCCAGGACAAAACATGCTTGGGTCACTTTGTCCTGAAGGGAGTGGTAATCTCTTGAATTTATCCAGAAGTGCCCAGTCCATGCTAACTGAACAACAGTTACAACAACAATCATGGGCGCTCGAGTGTACACCTCTACAGGTCATTCCCTTCGGCAACTCAGTGTCACACGTGCAATATTCTGGAAAAGATGCTACAATGGTGTCACCACATTGCAATTCAGATTCCCAAAATTCTACTCTCTTTGGTGTCAATATCGATTCATCTGGCCTTCTTCTTCCCACCACTGTCCCTCGTTATATTACTTCATCAGCTGACACTGATTCATCGACAATGCCATTAGTGGAATCTGGATTCCAGGATTCTCTTTATGGTTGCATGCAAGACTCATCAGAGTTGTTGCAAAGTCCGGGGCAACTTGACCCTCAAAACCAGACACGAACATTTGTGAAGGTTTACAAATCAGGATCAGTTGGGCGTTCACTCGACATCTCTCGGTTCAACAGCTATCATGAGCTGCGAGAGGAATTGGCTCAGATGTTTGCGATTGAGGGGAAATTAGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTGAATAACGTATGGTATATCAAAATACTTTCCCCCGAAGATATTCAGAAAATGTGA 1899 0.4466 MISYSLHIISGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSFLDGRDETTNGLMWLRGGPGDQGVNSLNFQGAGLFPWMQQRLDPTMLGNDQNQQYQAMSAAAGLQNLGSGDLLRQQMMNFQQPFYLQQSGNSNPPLQLQKQQVIQQSVSPNILQPQAQVLTENLSQQLLLKPPINREDQAQQQQHTYQDSLLIQTEQLHQRQHSNLPSPSYSKPDFFDSSMKLSAASVSPGQNMLGSLCPEGSGNLLNLSRSAQSMLTEQQLQQQSWALECTPLQVIPFGNSVSHVQYSGKDATMVSPHCNSDSQNSTLFGVNIDSSGLLLPTTVPRYITSSADTDSSTMPLVESGFQDSLYGCMQDSSELLQSPGQLDPQNQTRTFVKVYKSGSVGRSLDISRFNSYHELREELAQMFAIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKM* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1259 632 CDD B3_DNA 7 53 IPR003340 GO:0003677
Lan9g1259 632 MobiDBLite consensus disorder prediction 367 386 - -
Lan9g1259 632 Gene3D - 117 189 - -
Lan9g1259 632 Pfam AUX/IAA family 541 627 IPR033389 -
Lan9g1259 632 Gene3D - 4 54 IPR015300 -
Lan9g1259 632 Gene3D - 540 632 - -
Lan9g1259 632 SUPERFAMILY CAD & PB1 domains 541 618 - -
Lan9g1259 632 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 632 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan9g1259 632 ProSiteProfiles B3 DNA-binding domain profile. 1 55 IPR003340 GO:0003677
Lan9g1259 632 PANTHER AUXIN RESPONSE FACTOR 7 632 - -
Lan9g1259 632 Pfam B3 DNA binding domain 7 54 IPR003340 GO:0003677
Lan9g1259 632 Pfam Auxin response factor 79 162 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan9g1259 632 SUPERFAMILY DNA-binding pseudobarrel domain 9 82 IPR015300 -
Lan9g1259 632 ProSiteProfiles PB1 domain profile. 544 628 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1259 Lan-Chr9 19844886 19850500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1259 7 632 B3 DNA Binding Superfamily AT5G37020 65.463 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan9g1259 AUX_IAA 5.1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1259 - - lang:109356722 1230.7