Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1258 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGAGAGAAGAAGTGTTTGAATTCTGAACTATGGCATGCTTGTGCGGGTCCATTGGTGTCCCTACCAAATGCAGGGACTCGTGTGGTTTACTTTCCTCAGGGTCACAGTGAGCAGGTATCTGCCACGACTAACAGAGAAATTGATGGGCATATACCCAATTACCCAAGCTTGTCACCTCAGTTGGTTTGCCAGCTTCACAATCTTACGATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTGCAGCCATTGACTCCGCAAGAGCAGAAGGATGCGTTTATTCCTATGGAATTAGGCATTCCAAGTAAGCAGCCCTCGAATTACTTTTGCAAGACCTTAACCGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCCCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACTACAACCACCTGCACAAGAACTAATTGCCAGGGATCTCCATGATGTTGAGTGGAAATTTCGGCATATTTTCCGGGGGCAGCCAAAACGGCACCTTCTTACAACAGGATGGAGTGTATTTGTTAGTGCAAAAAGGCTTGTTGCTGGAGATTCTGTACTTTTCATATGGAATGAAAAAAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGGCCACAAACTGTGATGCCATCGTCAGTTCTATCAAGTGATAGTATGCACATTGGGCTTCTTGCTGCTGCTGCCCATGCTGCAGCAACCAATAGCTGCTTTACAGTGTTCTATAATCCAAGGGCTAGCCCATCCGAGTTCGTCATTCCACTATCAAAATATATTAAAGCCGTGTACCATACACGTGTTTCTGTTGGCATGCGCTTTAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGTAGGTACATGGGTACTATAACTGGCATAAGTGACTTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGATCAGTCAAGGTTGGTTGGGATGAATCCACAGCAGGAGAGAGACAGCCACGGGTGTCATTGTGGGAAATTGAGCCTTTAACAACATTTCCGATGTATCCATCACTATTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGCTCCTCATCTTTTCTTGATGGCAGAGACGAGACAACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGGAGACCAAGGAGTCAATTCCCTAAACTTTCAAGGTGCCGGTTTGTTTCCATGGATGCAGCAGAGGCTGGATCCAACTATGCTTGGAAATGATCAGAATCAGCAGTATCAAGCCATGTCAGCAGCAGCTGGTTTGCAGAACTTAGGAAGCGGAGATCTCTTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCTATCTTCAACAATCAGGAAACTCTAACCCTCCGTTGCAGCTTCAGAAGCAACAAGTGATTCAGCAATCAGTGTCTCCTAATATTCTGCAACCACAAGCCCAAGTATTGACTGAGAACCTGTCGCAGCAGCTCCTTCTGAAACCACCAATCAATCGAGAAGACCAGGCACAGCAGCAGCAACACACTTATCAAGATTCACTTTTAATTCAAACTGAACAGCTCCATCAGAGGCAACACTCTAATCTGCCTTCACCATCATATTCAAAACCGGATTTCTTTGATTCAAGCATGAAGTTATCCGCTGCTTCAGTTTCGCCAGGACAAAACATGCTTGGGTCACTTTGTCCTGAAGGGAGTGGTAATCTCTTGAATTTATCCAGAAGTGCCCAGTCCATGCTAACTGAACAACAGTTACAACAACAATCATGGGCGCTCGAGTGTACACCTCTACAGGTCATTCCCTTCGGCAACTCAGTGTCACACGTGCAATATTCTGGAAAAGATGCTACAATGGTGTCACCACATTGCAATTCAGATTCCCAAAATTCTACTCTCTTTGGTGTCAATATCGATTCATCTGGCCTTCTTCTTCCCACCACTGTCCCTCGTTATATTACTTCATCAGCTGACACTGATTCATCGACAATGCCATTAGTGGAATCTGGATTCCAGGATTCTCTTTATGGTTGCATGCAAGACTCATCAGAGTTGTTGCAAAGTCCGGGGCAACTTGACCCTCAAAACCAGACACGAACATTTGTGAAGGTTTACAAATCAGGATCAGTTGGGCGTTCACTCGACATCTCTCGGTTCAACAGCTATCATGAGCTGCGAGAGGAATTGGCTCAGATGTTTGCGATTGAGGGGAAATTAGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTGAATAACGTTTGGTATATCAAAATACTTTCCCCCGAAGATATTCAGAAAATGTGA 2424 0.4554 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVSATTNREIDGHIPNYPSLSPQLVCQLHNLTMHADVETDEVYAQMTLQPLTPQEQKDAFIPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSFLDGRDETTNGLMWLRGGPGDQGVNSLNFQGAGLFPWMQQRLDPTMLGNDQNQQYQAMSAAAGLQNLGSGDLLRQQMMNFQQPFYLQQSGNSNPPLQLQKQQVIQQSVSPNILQPQAQVLTENLSQQLLLKPPINREDQAQQQQHTYQDSLLIQTEQLHQRQHSNLPSPSYSKPDFFDSSMKLSAASVSPGQNMLGSLCPEGSGNLLNLSRSAQSMLTEQQLQQQSWALECTPLQVIPFGNSVSHVQYSGKDATMVSPHCNSDSQNSTLFGVNIDSSGLLLPTTVPRYITSSADTDSSTMPLVESGFQDSLYGCMQDSSELLQSPGQLDPQNQTRTFVKVYKSGSVGRSLDISRFNSYHELREELAQMFAIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKM* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1258 807 PANTHER AUXIN RESPONSE FACTOR 1 807 - -
Lan9g1258 807 SUPERFAMILY DNA-binding pseudobarrel domain 114 257 IPR015300 -
Lan9g1258 807 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Lan9g1258 807 MobiDBLite consensus disorder prediction 542 561 - -
Lan9g1258 807 Pfam AUX/IAA family 716 802 IPR033389 -
Lan9g1258 807 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Lan9g1258 807 Gene3D - 292 364 - -
Lan9g1258 807 ProSiteProfiles PB1 domain profile. 719 803 IPR000270 GO:0005515
Lan9g1258 807 CDD B3_DNA 127 228 IPR003340 GO:0003677
Lan9g1258 807 Gene3D - 715 807 - -
Lan9g1258 807 Gene3D - 126 229 IPR015300 -
Lan9g1258 807 SUPERFAMILY CAD & PB1 domains 716 793 - -
Lan9g1258 807 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 807 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan9g1258 807 SMART B3_2 128 230 IPR003340 GO:0003677
Lan9g1258 807 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1258 Lan-Chr9 19844886 19859461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1258 98 807 B3 DNA Binding Superfamily AT5G37020 68.793 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan9g1258 AUX_IAA 7.4e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1258 - - gmx:100784804 1423.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1063 2 21901469 21928343 Lan9g1258 9 19844886 19859461 LSH
Lan9g1258 9 19844886 19859461 Lan2g1063 2 21901469 21928343 PCT
Lan9g1258 9 19844886 19859461 Lan9g1257 9 19820048 19828455 PCT
Lan2g1063 2 21901469 21928343 Lan9g1258 9 19844886 19859461 PCT
Lan9g1257 9 19820048 19828455 Lan9g1258 9 19844886 19859461 PCT