Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1250 ATGTTAGCTGTTGCAGCTTCTGCTTCGAGGCACATTCTGCAACGCGATGCAAGACCCACCATTAGTTTAAGTGGTTCTAATGGGAGTGGCATTCAAATTCGGTCTCTTTTAAGCGCTTCTGGAATAAGCAACTTCTCAACTTGCACTAGAATTGTTAACAGAGGTTATGGTTATAGATTCAGCTTGAATCAGCAACAACAACAACAACAACAACGCAGAACATGCCCAAGTTTGCTTTTTTCCATAAAGGGATTCCTTTCTGATTCATCATCTTCATCTTCTTCTCCTCTACATGGCAGAGCAATCAAACCTTATCTATCACAGCCTAGTTCATCGTTAGATGGAAGAGCATCTTTCTCAACTTCAACTAAAACTAATGATGGAACCGCATCAAAGAAAACTAGTGCTTCCAACATTGCTAAGTCACCACCAGGGAAAGATGTTGCTGATATTAAGATCCTTCGCACTCTTGCCAGTTACATTTGGATGAAAGATAATCTCGAGTTTCGCTTTCGGGTTATTGCTGCATTGAGTTTTCTTGTTGGGGCTAAGGTTCTGAATGTTCAGGTACCATTCTTGTTCAAGCTTGCAGTTGATTGGTTAACTTCTGCCACTGGCAATGCTGGCGCTCTTGCTTCTTTTACAGTAGCAAATTCAACTGCGTTGGCTCTTTTTGCTACTCCAGCAGCTGTATTGATTGGATATGGGATTGCACGTGTAGGAGCTTCAGCTTTCAATGAACTTCGGACTGCTGTATTTTCTAAGGTAGCATTGCGAACAATTCGATTAGTATCAAGGAAGGTCTTCTCACATTTGCATGATCTTGACCTTCAATATCATCTAAGTCGAGAAACTGGCGCGTTAAGTAGAATAATTGATCGTGGTAGCCGTGCAATAAATTTCATTCTCTCAGCTATGGTGTTCAATGTAGTACCCACCATTTTAGAGATATCTATGGTGTCAGGTATACTGGCCTACAAATTTGGAGCTCCTTTTGCATGGATTACGTCCCTATCAGTTGCAGCTTATGTTGTTTTTACACTGAGTATCACACAGTGGAGGACTAAGTTCAGGAAAGCCATGAATAAGGCTGATAATAATGCGAGTACAAGAGCTATTGATTCACTTATTAATTATGAGACTGTCAAATATTTCAATAATGAAGATTATGAAGCTGTAAAATATGACGAGTACCTAAAGAAGTACGAGGATGCTGCTCTGAAAACACAGCGGAGTCTTGCTTTCTTGAACTTCGGTCAAAATATTATATTTAGTACTGCACTTTCAACAGCAATGGTGCTGTGTTCCCATGGGATCATGGGTGGTACGATGACTGTAGGTGATTTGGTGATGGTGAATGGGCTTCTCTTCCAACTATCTCTTCCACTGAATTTCTTAGGAAGTGTTTATCGTGAGACTATACAAAGTCTAGTTGACATGAAGTCCTTGTTTCAGTTACTTGAGGAAAGAGCAGACGTTAAGGATAAAGATGATGCGAAGCCTCTAAGATTTAACGGGGGGAGCATCCAATTTGATAATGTACATTTCAGTTATCTCACAGAAAGAAAGATACTAGATGGAGTGTCACTTGCGCTGCCGGCTGGCAAAAGTGTGGCAATTGTTGGGACAAGTGGAAGTGGAAAGTCAACAATTCTTAGATTGCTATTCAGGTTTTATGATCCTCAGTCTGGAAGTGTAAAGATAGATGGTCAAGATATTCGGGAGGTAACCCTTGAGAGTTTGCGGAAGTCTATTGGTGTTGTTCCTCAAGATACTGTACTTTTCAATGATACAATATTTCATAACATTCACTATGGTCGGCTTTCAGCAACAAAAGAGGAGGTCTATGAAGCTGCTCAGCGTGCAGCAATTCATGACACTATCTTGAACTTTCCTGATAAATATTCAACTCTTGTAGGAGAACGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTAGCTCGTGCGTTCTTGAAAGCACCTGCGATATTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCACTATCAAATAATCGAACTTCCATATTCATCGCTCACAGGCTTACCACCGCAATGCAGTGTGATGAGATCATAGTTTTGGAAAATGGAAAGGTGATTGAGCAAGGACCCCATGAAGTGCTTTTATCAAATGGAGGAAGATATGCACAGCTTTGGGGACAACAAAATAACACAATCGATGCAATTGATACAGCCATCAAACTTGGGGCATAA 2280 0.4092 MLAVAASASRHILQRDARPTISLSGSNGSGIQIRSLLSASGISNFSTCTRIVNRGYGYRFSLNQQQQQQQQRRTCPSLLFSIKGFLSDSSSSSSSPLHGRAIKPYLSQPSSSLDGRASFSTSTKTNDGTASKKTSASNIAKSPPGKDVADIKILRTLASYIWMKDNLEFRFRVIAALSFLVGAKVLNVQVPFLFKLAVDWLTSATGNAGALASFTVANSTALALFATPAAVLIGYGIARVGASAFNELRTAVFSKVALRTIRLVSRKVFSHLHDLDLQYHLSRETGALSRIIDRGSRAINFILSAMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVAAYVVFTLSITQWRTKFRKAMNKADNNASTRAIDSLINYETVKYFNNEDYEAVKYDEYLKKYEDAALKTQRSLAFLNFGQNIIFSTALSTAMVLCSHGIMGGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSLFQLLEERADVKDKDDAKPLRFNGGSIQFDNVHFSYLTERKILDGVSLALPAGKSVAIVGTSGSGKSTILRLLFRFYDPQSGSVKIDGQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAAQRAAIHDTILNFPDKYSTLVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLSNNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLSNGGRYAQLWGQQNNTIDAIDTAIKLGA* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1250 759 CDD ABC_6TM_ATM1_ABCB7 176 483 - -
Lan9g1250 759 Pfam ABC transporter transmembrane region 174 462 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan9g1250 759 MobiDBLite consensus disorder prediction 105 141 - -
Lan9g1250 759 ProSitePatterns ABC transporters family signature. 646 660 IPR017871 GO:0005524
Lan9g1250 759 Gene3D ABC transporter type 1, transmembrane domain 160 499 IPR036640 GO:0005524|GO:0016021
Lan9g1250 759 Gene3D - 501 755 IPR027417 -
Lan9g1250 759 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 509 743 IPR003439 GO:0005524
Lan9g1250 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 744 IPR027417 -
Lan9g1250 759 MobiDBLite consensus disorder prediction 105 145 - -
Lan9g1250 759 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 106 749 IPR039421 -
Lan9g1250 759 SMART AAA_5 534 720 IPR003593 -
Lan9g1250 759 Pfam ABC transporter 525 674 IPR003439 GO:0005524
Lan9g1250 759 PANTHER BNAA10G12020D PROTEIN 106 749 - -
Lan9g1250 759 SUPERFAMILY ABC transporter transmembrane region 168 489 IPR036640 GO:0005524|GO:0016021
Lan9g1250 759 CDD ABCC_ATM1_transporter 509 744 - -
Lan9g1250 759 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 174 475 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1250 Lan-Chr9 19767110 19780044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1250 345 745 Calmodulin-binding Proteins AT2G36910 36.165 4.54e-64 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1250 K05662 - gmx:100779975 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1058 2 21866774 21877575 Lan9g1250 9 19767110 19780044 LSH