Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1249 ATGGCAAAAGGGTGCGCCAACAACACTTATGAAGAGGCTAGGAAACAAAGACTTGAAGAAAACAAAAAGAGGTTTGAGGATTTGGGAATTTCGAAGATTTCAAAAACTCTAACTGAAGTCACAACTCCTGTGAAGAAGACACATCATCATCTTCCAAAATCGAAATCAAAGTCTAATGATCTAGTGGAACCTAGGCGCTCTTCTCGTACGCGAAACCCGATTGCTTCGTATAGTGAAGAGGCTGGTATAGACCTTCCAACTTTGCGGAAGAGGTCACGATCAAATTCTTCAAGCTGCTACAGTTATATTGCAAGACCACTGGAGGAAATCAAACAAGCTTCAGATAAACAAAGATCTCGTGCTTGGGAGGCTGCAGAGAAACTCCACACCAATTTGCAATCTGAAAACCCAACTTTTATAAAGTCGATGGTTCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATCTTCCAAAAACTCATTATAACATGATTTTAGAGGATGAAAATGGCTCAGAATATGAGGCTGTGTACATTGGCTCAAGAAGTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGAGCATAAGTTGGATGATGGTGACGCTCTTGTTTTTGAATTGATTGAACCAGCAAGATTTAAGATTTATACTGTTAAAGCATTTCCAGATTCAGTTGAAGAATATGAAAAGGAGGAGCCTGAGGAGAAAGAAGGAAACATGCGTGCAACAAGAGCATTAAAAGCTGGAAGTAAAGGTGAAACAAAATCGAAGAAGACAAGAAAGTCAAAACAGGCTATTGTTGTATATGAAACCAACGAATCAGAGAGTTCTCAGGAGCATCTGCCACAAAGTAGCATTGACAATGAAGTCAAAGCACACGAGATAAGCCCAACTAAGATAACAGTTTCTCAGGAAAAAATGCAGGAGAAATCTAAAATGCTTGCTACTGGTGTGTCAAAAGTGGAAGGACAAGTTGAAAGAGTGAAACCAAAGGGGAAAAATCTTGTCAAACCTCGAGGGGCTAAACCCGGTAAGAAACAAAAGGTTACAAAAAATCTCGTTCAAGATGATGGCGAGTTAATGGATGTTGAACCAGTTGAAGAAGCAAGCAAAGATGATTCACACGTTGAAAGTGTGAAACCAAAGGCAAATAATATTGTCAACCCTCGAGGGGCGAAACCAAGCAAGGAACCAAAGTCTACAGATAATCTTGTTCAGGATGGTGTTGAGTTAGAGAAAGTTGAACCAGTTGAGGAAGCAAGAAAATGTGTTTCACAAAAACCTCGAAAAAAAGCAGCTGGGAAGCTTTTCAGGAAGAGAGCTTAG 1353 0.4035 MAKGCANNTYEEARKQRLEENKKRFEDLGISKISKTLTEVTTPVKKTHHHLPKSKSKSNDLVEPRRSSRTRNPIASYSEEAGIDLPTLRKRSRSNSSSCYSYIARPLEEIKQASDKQRSRAWEAAEKLHTNLQSENPTFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTHYNMILEDENGSEYEAVYIGSRSGLSGGWRAFALEHKLDDGDALVFELIEPARFKIYTVKAFPDSVEEYEKEEPEEKEGNMRATRALKAGSKGETKSKKTRKSKQAIVVYETNESESSQEHLPQSSIDNEVKAHEISPTKITVSQEKMQEKSKMLATGVSKVEGQVERVKPKGKNLVKPRGAKPGKKQKVTKNLVQDDGELMDVEPVEEASKDDSHVESVKPKANNIVNPRGAKPSKEPKSTDNLVQDGVELEKVEPVEEARKCVSQKPRKKAAGKLFRKRA* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1249 450 MobiDBLite consensus disorder prediction 238 274 - -
Lan9g1249 450 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 244 IPR044837 -
Lan9g1249 450 MobiDBLite consensus disorder prediction 305 358 - -
Lan9g1249 450 Coils Coil 8 28 - -
Lan9g1249 450 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 4 244 - -
Lan9g1249 450 MobiDBLite consensus disorder prediction 374 388 - -
Lan9g1249 450 SUPERFAMILY DNA-binding pseudobarrel domain 132 226 IPR015300 -
Lan9g1249 450 SMART B3_2 139 233 IPR003340 GO:0003677
Lan9g1249 450 Pfam B3 DNA binding domain 139 223 IPR003340 GO:0003677
Lan9g1249 450 ProSiteProfiles B3 DNA-binding domain profile. 139 230 IPR003340 GO:0003677
Lan9g1249 450 MobiDBLite consensus disorder prediction 415 435 - -
Lan9g1249 450 MobiDBLite consensus disorder prediction 39 75 - -
Lan9g1249 450 MobiDBLite consensus disorder prediction 374 450 - -
Lan9g1249 450 MobiDBLite consensus disorder prediction 305 319 - -
Lan9g1249 450 Gene3D - 113 231 IPR015300 -
Lan9g1249 450 MobiDBLite consensus disorder prediction 436 450 - -
Lan9g1249 450 CDD B3_DNA 137 225 IPR003340 GO:0003677
Lan9g1249 450 MobiDBLite consensus disorder prediction 243 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1249 Lan-Chr9 19754060 19758361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1249 10 229 B3 DNA Binding Superfamily AT5G58280 51.004 1.88e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan9g1249 B3 8.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1249 - - lang:109355714 871.692