Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1244 ATGGAATCTGAAGTTTGCATGAATGGTTCGTGCCGCGGTGTTGGGTATGAACGTGAATGGAAGCAGGGTTGGTCTCTGGAATCTGGTGGATTTGCTCGTCTTTGCAACAATTGCGGATCTGCTTATGAGAGTTCAATCTTCTGTGAGAAATTCCATCGTGAAGAAACTGGTTGGAGGGAGTGCAGCTATTGCAACAAGTCTATACACTGTGGATGCATAGTATCGCTGTCTTTGTTCAAGCACCTTGATTTTGGAGGTATAGGTTGTGTTACCTGTCTGAAGACTTCCCAACACTCTCTGGATATTGAAAATCCTAATGTGTCTTTGATGTCAACCAAAAATAATGCAAGTAATCGGCATGCTGCTCATAAGGATGATAGACTGTTGGTGGATAGTGATGATGAAGGGAGACTTATGCAACTGTGTAGAATTATTCAAGCTACTGAATCAAGCCAATGCCCTCAAGCTCAGAGAGATGGCATAGTTTCGCGTATTGATTCAATCAGCCAAGAAGTTAAGTGTTCATTCAGGGAAGCGGATGCAAGATTTTCGAAATTGATGAAACCGTCAAGTCATACATTAACATCTACCTCATTAGGAAACAGTAGACCAACATGGGAGAACAAAAATATGCATGATGCACTTGCTCTAAGCATGTCACTGGGAACCCCATCAAAAAACACTGTCCTGCCTTCTGCTACAGAGAAGGCAGAAGAGAGAGTTGAGGGCAAAGAATCTCCTCCCTTTCATCAAGGGCAAAGGTCTCACCCTATATTGCCCAAACGACCGAAAACTGGGCTAACCATGAATCTGGAAACAAATAATGGAATGATTTCTGAGGCACGAGTTCCACGGCCACCTGCTGAGTATAGTGGCAAGCATCAGTTACTGCCTCGATACTGGCCCAAGATAACTGATCAAGAGCTGGAGAAATTGTCTACGGATTTGAAGTCCACCGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCAGAGGCTTATTTTCCTCATATTTCACATTCAGAAGGCATTCCTTTGCAGTTCCAAGATGTGAAGGGGAATGAGTGGACACTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGGATGTATGTATTGGAGGGCGTGACACCTTGCATACAGTCCATGCAATTAAATGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGAGACAAATTTGTTTTGGGTTTCAGAAGGGCATCAAGTTCTATCGATACACAGGATGCCAATGCATCTGCTCAATCTAATGGCATCTCAACAAAGGAAACTGTTACTGCTCCAACTCAGAACCCGCAATCAAGAAGTAATTGCCCGGATCTTCTGTCAAAGAAAGAGATAGTGGAACCTCACTTAAATGGGCATCCAGAACATCTGCTTTTGGGTACCGGGGGTGATAAAAAATGTGAGATGATAAAAAATGATCTGTTGCGGCAACCGATTTCAGATTCAGAGAAGAAGAGGACTCGTAATATTGGGCCTAAAAGTAAGAGGCTTCTCATTCATAGTGAAGATGCGATGGAGTTGAGACTTACATGGGAAGAAGCACAGGGCTTGCTTCATCCGCCACCTAGCGTCAAGCCAAATATTGTAACAATTGAGGACCAAGAAATTGAAGAGTACCATGAAGCCCCGGTTATTGGGAAGAGAACTATATTCAATGCCAGTCCAACTGGGGTTCCAGTAAATGTTCTTCTTCCCAAGTGGACATGTTCTGATAATGTTTGGGATGCAAGCAGGTCTTCATGTTCTGCACCAGAGGAGAGGAGTGGAATGGAATTAGATAATCTCCTGAGAACCAGCAAAGTTTCTAAGAAGCGGAGAAGGCTAGAAAAGAGCGAGTCAGTTGAAGAACATGAGCCTTCTGGCTTAGAAGCTCTTGCCAATGCAGCAGTTTTGGGTGACATTCTTCTTGACCCTGCTGAGCCATCATCTAGAGTCACCACAAAACATCCAAGGCACCGTCCTGGCTGCACTTGCATTGTGTGCATTCAGCCTCCAAGTGGGAAAGGGAAACATAAACCGACATGTAACTGCCTTGCATGCACGACAGTGAAGCGCCGGTTCAAAACCCTTAAGATGCGCAAGAAGAAACGCCAATCAGAACGTGAAGCAGATGCATCTGCTTCCCATAAAGATCAAATTCAGCCAATGGATGAGCCAGATGCCAATGGAGCATCAAAAGATGATACAAGTCAATTAGATGAACCCAGTGCTGCTGCACATATAGATCTGAATTATGATCCCAACAGCGAAGACATGCCAGTGGATGATATTTCGGGACGGAGCGCTTGA 2364 0.4429 MESEVCMNGSCRGVGYEREWKQGWSLESGGFARLCNNCGSAYESSIFCEKFHREETGWRECSYCNKSIHCGCIVSLSLFKHLDFGGIGCVTCLKTSQHSLDIENPNVSLMSTKNNASNRHAAHKDDRLLVDSDDEGRLMQLCRIIQATESSQCPQAQRDGIVSRIDSISQEVKCSFREADARFSKLMKPSSHTLTSTSLGNSRPTWENKNMHDALALSMSLGTPSKNTVLPSATEKAEERVEGKESPPFHQGQRSHPILPKRPKTGLTMNLETNNGMISEARVPRPPAEYSGKHQLLPRYWPKITDQELEKLSTDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISHSEGIPLQFQDVKGNEWTLQFRFWPNNNSRMYVLEGVTPCIQSMQLNAGDTVTFSRIDPGDKFVLGFRRASSSIDTQDANASAQSNGISTKETVTAPTQNPQSRSNCPDLLSKKEIVEPHLNGHPEHLLLGTGGDKKCEMIKNDLLRQPISDSEKKRTRNIGPKSKRLLIHSEDAMELRLTWEEAQGLLHPPPSVKPNIVTIEDQEIEEYHEAPVIGKRTIFNASPTGVPVNVLLPKWTCSDNVWDASRSSCSAPEERSGMELDNLLRTSKVSKKRRRLEKSESVEEHEPSGLEALANAAVLGDILLDPAEPSSRVTTKHPRHRPGCTCIVCIQPPSGKGKHKPTCNCLACTTVKRRFKTLKMRKKKRQSEREADASASHKDQIQPMDEPDANGASKDDTSQLDEPSAAAHIDLNYDPNSEDMPVDDISGRSA* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1244 787 CDD B3_DNA 322 423 IPR003340 GO:0003677
Lan9g1244 787 Gene3D - 302 429 IPR015300 -
Lan9g1244 787 Gene3D - 578 622 - -
Lan9g1244 787 ProSiteProfiles B3 DNA-binding domain profile. 324 425 IPR003340 GO:0003677
Lan9g1244 787 SMART B3_2 324 425 IPR003340 GO:0003677
Lan9g1244 787 MobiDBLite consensus disorder prediction 429 462 - -
Lan9g1244 787 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 780 - -
Lan9g1244 787 MobiDBLite consensus disorder prediction 721 749 - -
Lan9g1244 787 MobiDBLite consensus disorder prediction 714 787 - -
Lan9g1244 787 Pfam B3 DNA binding domain 324 424 IPR003340 GO:0003677
Lan9g1244 787 MobiDBLite consensus disorder prediction 243 266 - -
Lan9g1244 787 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 780 - -
Lan9g1244 787 SUPERFAMILY DNA-binding pseudobarrel domain 322 426 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1244 Lan-Chr9 19719897 19726853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1244 1 777 B3 DNA Binding Superfamily AT2G30470 47.955 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan9g1244 B3 5.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1244 - - lang:109356710 1601.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0355 11 2558055 2564886 Lan9g1244 9 19719897 19726853 LSH
Lan4g0273 4 4423388 4431074 Lan9g1244 9 19719897 19726853 PCT
Lan16g0551 16 6496808 6504565 Lan9g1244 9 19719897 19726853 PCT
Lan9g1244 9 19719897 19726853 Lan4g0273 4 4423388 4431074 PCT
Lan9g1244 9 19719897 19726853 Lan16g0551 16 6496808 6504565 PCT