Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1237 ATGGAGAAATCATTGTTATTAGTTCTTTCAAATGGGATATCCGCATTTTTAAATTTATCATTTTCTGCAAACATTAACTCAGAACCTGTATCAATGTGTTACCGAAAGGCAGAGGAGATACTCAAGTTTCTGAAGCCGATTATTGATGCAAATCATTATTCTGATTTAGCTTCTGATGAAGTGCTTGATAAGTTATTTGAGGCACTTGATCAAACTATTGATGAGTTGGGAGAACTTATTGAGCACTGGCATATATTGTCTAGCAAACTTTACTTTGTTATGCAAGCTGAACCCTTGATAGCTAGAATTCAGTCTTTGGGGCTCAATATTTTAGGACAGCTGAAGGCTCCACAAGATTGTCTCCTTGATGCTTTGGGACTTGAAACGTCATCAATCATTAAAAAAGCTATTATGGAACAACAGGAAGGTGTAGGACCCAGTTCCGAGGTCCTGGCAAAGATTGCTGAGAACCTGGGCCTAAGGTCTAACCAGGAGGTTCTTATTGAGGCTGTGGCCCTCGAAAAGTTGAAGGATAATGCTGAACAAACTGAGAAGACTGTGGAAGCTGAATATATTGATCAAATGATCTCTGTTGTAACTCATATGCATGAGCATCTTATTTTGCTTAAGCAAGCTGAGAGTCTTATCCCAGTTCCAGTACCAGCTGATTTCTGCTGTCCTCTCTCTTTGGAGTTGATGATAGATCCAGTCATTGTGGGATCAGGGCAAACCTATGAGCGTGCTTTCATCAAGAACTGGATTAGTCTTGGGCTTAATGTTTGTCCAAAGACACGTCAAACTCTGGTTCATACCAACCTAATACCTAATTACACTGTGAAGGCATTAATTGTTAATTGGTGTGAATCAAACAGTGTCAAGTTAGTCGATCCCATGGTAAACTCCACAAACTTAAATCAAGCATCTCTCCATAATGGGTCGGTGGAGTCTGGCTCAACCAAGGAATCACCGGTTATCACTTTTGGTGGAACCCACCAAGAAGGTACGTCACCATTGCACCCCCTTTCAACTTCAGAAGGTTCCTTAGGTGGCATGGTTAATGGGCAGTATGTGGGTCTTGTAAGATTATCTTCTACAGATTCAGATGACAGGTCTGCTAACTCGGATGAATGGAGCGTGAGTTCAGTTGACCAATCATTAATGTCGCCATCTAGAAGGGAATCCTCCAATGCATTTATCTTAGAACAGTCTCCAGTCCATGTTAGAACTGCTTCCTATTCCAGTGCAATCCCTATTGGGAATTTTCCTCAAGGCACACGAGGTGATAACAACAGTGCTCCTCTGATGTCAACCACTCCAGTCCACAGCCGAGATGCTTCAGGGGAATTAACTCCAGTGTCAGATGCTGCCACCATGGTGACTCTTCATAGAGAACCTGAGTTTCCACTCCAATTGGTAGAGCCAAATTCTCGAATCCAACCTGTTGGGAGGCGGCCATTGGAGAGGCTTGTTCCTAGGATAGTTCCTTCTCCTACTGAAACAAGAGCTGATCTTTCTGGTATTGAAACAGAGGTTCGGAAATTGGTTGAGAACTTGAAGAGCTCTTCTCTTGATACTCAGAGGGATGCAACATCAGAACTCCGTTTTCTTGCCAAGTACAATATGGATAACCGAATTGTGATTGCAAACTGTGGAGCCATTAACTTATTAGTCGATCTGCTGCAATCAACCGATACAGTAATCCAGGAAAATTCTGTCACAACACTTCTTAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCGATTGAACCTCTGATTCGTGTCCTTGAGACAGGGACTCCAGAAGCCAAGGAGAATTCTGCTGCTACTCTTTTTAGCATATCCGTGATTGAGGAAAACAAGATCAGGATAGGAAGGTCTGGGGCAATTGGACCACTGGTTGATTTATTAGGGAACGGAACACCAAGAGGGAAGAGAGATGCTGCTACTGCATTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCGGATTGTCGAAGCTGGTGCTGTTAAGCACCTTGTAGACTTAATGGACCCTGCAGTTGGTATGGTTGATAAAGCAGTGGCTGTTTTAGCAAATCTTGCCACAATATCAGAAGGAAGGACTGAAATTTTCGAACAAGGTGGAATTCCGATTCTGGTTGAGGTTGTCGAGTTGGCTTCTCGGAGAGGAAAGGAGAATGCAGCAGCGGCTCTTCTACATCTATGTTCAAACAATCCGAGATATTTAAATACCGTGCTCCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCACAGTCAGGCACTCCAAGGGCCAAAGAAAAGGCCCTGGCTCTCCTTAATCAATTCAAAAACCAAAGACGTAATGGCGCTGGGAGGGGCTGA 2385 0.4285 MEKSLLLVLSNGISAFLNLSFSANINSEPVSMCYRKAEEILKFLKPIIDANHYSDLASDEVLDKLFEALDQTIDELGELIEHWHILSSKLYFVMQAEPLIARIQSLGLNILGQLKAPQDCLLDALGLETSSIIKKAIMEQQEGVGPSSEVLAKIAENLGLRSNQEVLIEAVALEKLKDNAEQTEKTVEAEYIDQMISVVTHMHEHLILLKQAESLIPVPVPADFCCPLSLELMIDPVIVGSGQTYERAFIKNWISLGLNVCPKTRQTLVHTNLIPNYTVKALIVNWCESNSVKLVDPMVNSTNLNQASLHNGSVESGSTKESPVITFGGTHQEGTSPLHPLSTSEGSLGGMVNGQYVGLVRLSSTDSDDRSANSDEWSVSSVDQSLMSPSRRESSNAFILEQSPVHVRTASYSSAIPIGNFPQGTRGDNNSAPLMSTTPVHSRDASGELTPVSDAATMVTLHREPEFPLQLVEPNSRIQPVGRRPLERLVPRIVPSPTETRADLSGIETEVRKLVENLKSSSLDTQRDATSELRFLAKYNMDNRIVIANCGAINLLVDLLQSTDTVIQENSVTTLLNLSINDNNKTAIANAGAIEPLIRVLETGTPEAKENSAATLFSISVIEENKIRIGRSGAIGPLVDLLGNGTPRGKRDAATALFNLSIFHENKDRIVEAGAVKHLVDLMDPAVGMVDKAVAVLANLATISEGRTEIFEQGGIPILVEVVELASRRGKENAAAALLHLCSNNPRYLNTVLQEGAVPPLVALSQSGTPRAKEKALALLNQFKNQRRNGAGRG* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1237 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 294 IPR013083 -
Lan9g1237 794 PANTHER U BOX DOMAIN-CONTAINING 9 790 - -
Lan9g1237 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 633 675 IPR000225 GO:0005515
Lan9g1237 794 SUPERFAMILY RING/U-box 209 296 - -
Lan9g1237 794 Gene3D - 501 789 IPR011989 -
Lan9g1237 794 MobiDBLite consensus disorder prediction 374 393 - -
Lan9g1237 794 Coils Coil 163 193 - -
Lan9g1237 794 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Lan9g1237 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 674 715 IPR000225 GO:0005515
Lan9g1237 794 SUPERFAMILY ARM repeat 511 783 IPR016024 -
Lan9g1237 794 Pfam U-box domain 220 291 IPR003613 GO:0004842|GO:0016567
Lan9g1237 794 CDD RING-Ubox_PUB 224 266 IPR045210 -
Lan9g1237 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 593 IPR000225 GO:0005515
Lan9g1237 794 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 790 - -
Lan9g1237 794 MobiDBLite consensus disorder prediction 364 393 - -
Lan9g1237 794 SMART arm_5 663 702 IPR000225 GO:0005515
Lan9g1237 794 SMART arm_5 581 621 IPR000225 GO:0005515
Lan9g1237 794 SMART arm_5 744 785 IPR000225 GO:0005515
Lan9g1237 794 SMART arm_5 540 580 IPR000225 GO:0005515
Lan9g1237 794 SMART arm_5 703 743 IPR000225 GO:0005515
Lan9g1237 794 SMART arm_5 622 662 IPR000225 GO:0005515
Lan9g1237 794 Pfam Armadillo/beta-catenin-like repeat 665 701 IPR000225 GO:0005515
Lan9g1237 794 Pfam Armadillo/beta-catenin-like repeat 542 579 IPR000225 GO:0005515
Lan9g1237 794 Pfam Armadillo/beta-catenin-like repeat 624 661 IPR000225 GO:0005515
Lan9g1237 794 Pfam Armadillo/beta-catenin-like repeat 581 620 IPR000225 GO:0005515
Lan9g1237 794 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1237 Lan-Chr9 19663118 19668088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1237 180 794 U-box Gene Family AT2G23140 58.385 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1237 - - gmx:100813786 1091.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0362 11 2629205 2633644 Lan9g1237 9 19663118 19668088 LSH
Lan16g0533 16 6197740 6208889 Lan9g1237 9 19663118 19668088 PCT
Lan9g1237 9 19663118 19668088 Lan16g0533 16 6197740 6208889 PCT