LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan9g1223	ATGTCTAACTCAATCCCCAGCTCCAGTAACCCAATCCCTAGCTCTAGTAACCCAATCCCAAGCTCTGGTGACCCACTCCCTAGCTCTAGTAACCCAAAGAAGAACAACGGTCGTAGAAGGATTGAGATGAAAATGATACCCAAAGACAGCAACCTACAAGTCACATTCTCCAAACGCCGCACTCGGCTATTCAAGAAAGCGAGCGAGCTTTGGACTCTTTGTGATGCAAAAGTTGGGCTAGTTGTCTTTTCTCCTACAAACAAGGCTTTCTCCTTTGGCAACCCTAGTATTGATGCTGTCGTAGACCGCTATCAAATGAGGGACCAACCACTGAACCTGGTGAACATGCAATATCTTGAGGCTCACAAAAATGCTAATGTGCAGGAGCTTAATGATAAGATTAATCGGATCAATGAAGATCTTGAGAATGAGAAGAAGTGCAAGATCAATGGAGAACGAGTTGATCAATTGAAGTCGGCTCTTGAGAATCTAAAGAAGAATGTGCTTGGTGTTGTTGAAAGGCAGAATATTGTCGAGGCTGCTGCTACTGTTGCTGCTCCTATCCCACCTCCTCCTCACTTTTTTACAGGTGGTGCATCTTCTTCAAACAACCCTTTGCCACCACCACCTCAGCCACCAACTCAGGAGTTTCAGGTGCAGCCGCCACTGCCACCTCAACAGTTTCCTGTGAATCCACAACCACCACCTCAGCAGTTTATGCAGCCACAACCACTACCTCAGCAGTTTCCGATGTACCACCACCACCACCACATATGCTTCAGAATCAGTCCATGA	795	0.4667	MSNSIPSSSNPIPSSSNPIPSSGDPLPSSSNPKKNNGRRRIEMKMIPKDSNLQVTFSKRRTRLFKKASELWTLCDAKVGLVVFSPTNKAFSFGNPSIDAVVDRYQMRDQPLNLVNMQYLEAHKNANVQELNDKINRINEDLENEKKCKINGERVDQLKSALENLKKNVLGVVERQNIVEAAATVAAPIPPPPHFFTGGASSSNNPLPPPPQPPTQEFQVQPPLPPQQFPVNPQPPPQQFMQPQPLPQQFPMYHHHHHICFRISP*	265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan9g1223	264	ProSiteProfiles	MADS-box domain profile.	36	96	IPR002100	GO:0003677\|GO:0046983
	Lan9g1223	264	MobiDBLite	consensus disorder prediction	1	47	-	-
	Lan9g1223	264	Gene3D	-	49	118	IPR036879	GO:0003677\|GO:0046983
	Lan9g1223	264	CDD	MADS_MEF2_like	37	105	IPR033896	GO:0000977\|GO:0045944
	Lan9g1223	264	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED	36	159	-	-
	Lan9g1223	264	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	46	92	IPR002100	GO:0003677\|GO:0046983
	Lan9g1223	264	SMART	madsneu2	36	95	IPR002100	GO:0003677\|GO:0046983
	Lan9g1223	264	PANTHER	MADS BOX PROTEIN	36	159	-	-
	Lan9g1223	264	PRINTS	MADS domain signature	38	58	IPR002100	GO:0003677\|GO:0046983
	Lan9g1223	264	PRINTS	MADS domain signature	58	73	IPR002100	GO:0003677\|GO:0046983
	Lan9g1223	264	PRINTS	MADS domain signature	73	94	IPR002100	GO:0003677\|GO:0046983
	Lan9g1223	264	SUPERFAMILY	SRF-like	37	108	IPR036879	GO:0003677\|GO:0046983
	Lan9g1223	264	MobiDBLite	consensus disorder prediction	203	243	-	-
	Lan9g1223	264	Coils	Coil	120	174	-	-
	Lan9g1223	264	MobiDBLite	consensus disorder prediction	1	34	-	-
	Lan9g1223	264	MobiDBLite	consensus disorder prediction	188	248	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan9g1223	Lan-Chr9	19525970	19526830	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan9g1223	33	204	Type I MADS-box Gene Family	AT5G60440	42.424	8.62e-34	122

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Lan9g1223		SRF-TF	4.7e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan9g1223	-		-	lang:109339900	296.204