Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1216 ATGTCTTTTCAAGTACCTAGCCATAACACCCACTTTTTCAAGATAATTCTTGAAAGCACCCTTAGAGATGGAAACCTGAGAATTCCAAGAAGTTTTGTGAAGCAATATGGGAAAGAATTATCAAACCCTGTACTCCTTAGGCTTCCAAATGGTGTTAAATGGAAAGTGAATTGGATAAAACGTGATGGTGGTGATGTTTGGTTTCAGAAACTTTGGGAAAGATTTGCACAATATTATTCCCTGAGTTTTGGCCATTTGTTAATTTTTAGATATGAAGGAAGATCCAATTTTCAGGTTCTGGTTTTTGATATGAGTGCTGTAGAAATAGATTACTCAAGTATAAGAAGCACATATGAAGGTGTTGAGATTCTTGATGACAATGGCAGACCAAAATCTCCATTAGTGATGAAGAAAACCAACAAAACTGCACAACATAGAAGCTGCTTCAACCCACTTTCTGAAAATAAAAGGGTAAAGCATGAAAACAAGAAAATCAATTTGGGTTTTGATGATTTTCAGCAAAAAGTCACAGGAGAGTTTATTTTCTACTACTACTATTATTATTATTATCTGATTCAATTTTTAGTACTGAACTTTTTAGATCAAGGATTGCAATGTTGA 621 0.3382 MSFQVPSHNTHFFKIILESTLRDGNLRIPRSFVKQYGKELSNPVLLRLPNGVKWKVNWIKRDGGDVWFQKLWERFAQYYSLSFGHLLIFRYEGRSNFQVLVFDMSAVEIDYSSIRSTYEGVEILDDNGRPKSPLVMKKTNKTAQHRSCFNPLSENKRVKHENKKINLGFDDFQQKVTGEFIFYYYYYYYYLIQFLVLNFLDQGLQC* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1216 206 ProSiteProfiles B3 DNA-binding domain profile. 11 105 IPR003340 GO:0003677
Lan9g1216 206 PANTHER B3 DOMAIN-CONTAINING 7 164 - -
Lan9g1216 206 SMART B3_2 12 105 IPR003340 GO:0003677
Lan9g1216 206 SUPERFAMILY DNA-binding pseudobarrel domain 6 105 IPR015300 -
Lan9g1216 206 CDD B3_DNA 11 103 IPR003340 GO:0003677
Lan9g1216 206 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 164 - -
Lan9g1216 206 Pfam B3 DNA binding domain 13 103 IPR003340 GO:0003677
Lan9g1216 206 Gene3D - 4 106 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1216 Lan-Chr9 19468635 19469572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1216 12 127 B3 DNA Binding Superfamily AT1G49475 43.103 3.99e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan9g1216 B3 6.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1216 - - lang:109356427 418.698