Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1207 ATGCAAAGCCAATCCGAGTCACCCAACAAGCCCATGAACTCACTGAGTCAACTCGTTCAAAACATGTTCTCCAACAATAACATCATGCTTGTAGCCATAGTTTCTTTGCTCCTAGTCATCCTCTTCGTCCTCCTTCTCCACATCTACGCCAAGTTCTTCTTATCTCCGGCACAACCTCGCCGCCTCAGAACTCCGGCCACCGTCGAACCTTCCCGGATGCACCACTTTCACTTCATAGAAACCTCACCCATTTCGACAAAAGGACTCGACTTTCCAACAGTTTCGAGGATTCCCATGTTTGTGTATGAAGCAGAAACAAAGGAATTGGAATGTGTGATTTGTTTGAGTGGTTTTGAGGAAGGTGAGATTGGAAGAAGGTTACCAAAGTGTGGCCACGCTTTTCATTTGGAATGCATTGACATGTGGCTAAGTTCACATTGCACTTGTCCAATTTGTAGAGCTCATATTGTGGTCCAAAACAATGATGGTGATGATGATGATATGCTTCAGATTGTGATTGGAACTAGTGAGGGTGAGAGTGTGAATGATAATTATAGAGGTGGTGGTGTTAGTGTTTCACAAACTTCATCATCTTTGTTATTGGCTTGTTCTTTTAAGAGAATGTTAAGTACAGTTTTTCAATCTTCCAATCCAATGTAA 660 0.4242 MQSQSESPNKPMNSLSQLVQNMFSNNNIMLVAIVSLLLVILFVLLLHIYAKFFLSPAQPRRLRTPATVEPSRMHHFHFIETSPISTKGLDFPTVSRIPMFVYEAETKELECVICLSGFEEGEIGRRLPKCGHAFHLECIDMWLSSHCTCPICRAHIVVQNNDGDDDDMLQIVIGTSEGESVNDNYRGGGVSVSQTSSSLLLACSFKRMLSTVFQSSNPM* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1207 219 SUPERFAMILY RING/U-box 104 167 - -
Lan9g1207 219 PANTHER - 7 217 - -
Lan9g1207 219 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lan9g1207 219 CDD RING-H2_EL5_like 110 153 - -
Lan9g1207 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 163 IPR013083 -
Lan9g1207 219 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 217 IPR044675 -
Lan9g1207 219 SMART ring_2 111 152 IPR001841 -
Lan9g1207 219 Pfam Ring finger domain 110 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1207 Lan-Chr9 19400842 19401981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1207 25 154 Rapid Response to Elicitors AT3G16720 41.912 5.24e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1207 - - aprc:113874423 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1012 2 21182459 21183440 Lan9g1207 9 19400842 19401981 LSH
Lan2g1012 2 21182459 21183440 Lan9g1207 9 19400842 19401981 PCT
Lan16g0773 16 13452068 13453243 Lan9g1207 9 19400842 19401981 PCT
Lan9g1207 9 19400842 19401981 Lan2g1012 2 21182459 21183440 PCT
Lan9g1207 9 19400842 19401981 Lan16g0773 16 13452068 13453243 PCT