Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1204 ATGGTTTGTTGGGTGAGAGGAAAATGTATAGGTAAGGGTGCGTTTGGCACCGTCAATATTGCGGTTGCTAAATCTAACGGTCAAGTATTTGCGGTTAAGTCAGTTGATCGTAAAACGGGTCTACCGGGTCAGGTAGAGGCGTTGGAGAACGAAATTAAGATTCTACGGCGTTTGGATTCACCTCACGTGATTTCTTTTCTCGGCGATGATGTCACGTGTGAATCAACGACGTCGTATCGGAACCTTCACATAGAGTACATGCCAGGTGGTAACGTCGCTGACATGGATCGTGCTTACGTGGACGAAGTGTTAGTGAAGCGTTACACTTGGTGCCTTGTCCACGCGCTTCGACACGTTCACGAGCTTGGCGTGGTGCATTGCGACGTGAAGGGAAGGAACGTGCTCCTCGCCGGCGACGGCTCCGTCGCGAAGCTCGCTGATTTCGGCTCCGCGGTGGAGTTCAATCACGCGACAGGTATTCTGCCACGTGGAAGCCCGATGTGGATGTCGCCGGAGGTAATTCGCCGGGAATACCAGGGGCCGGAATCGGACGTGTGGTCTCTTGGATGCACCGTGATCGAGATGTTCACCGGAAAAACGCCTTGGAAGGACGACGGCGTCGACACGCTGAATCGAATTGGATTTTCTAGTGCTTTGCCGGAGTTTCCAAATGCGTTATCAGAGCTTGGACGAGATTTTCTGGAGAAATGTTTAAGAAGGGAAGCAAAAGAAAGATGGAGCTGTAATCAGCTGCTACAGCATCCATTTTTGCAGATAGAGTCTTTCACTAAGGTTTCAGAATCATCGCCACGGTGCATTTTGGACTGGTTTGAATCAGAAGAAGAGAAAATGGAATTGGATAGTGAAAATTCAGGGAAGGGTAGGATTGGTAAATTAGATACAGGGATAAGGGCAAATTGGGAAATACAGGGTTGGGTTGAGGTGAGGGCAATTGAGTCATCTGAACTAGAATCATCAACTACAACCGCAGGGTTTGATGAAGAAAGAGGGGTAAATTGGGAATTCGGGAATGTGGCGAGGGTAGAAAAGGAAATGGAAATAGGGAGTCGTTTGGAATATTGGGATAGTGGAAAATTTGGAACATCAAAAAATGAGAGGGTAAAACGGGAAATGCCGAGAATTAGGAGGTTGGTGTGGCGGTGGTGCCGTAACCGTAAGAAGAGGGTAATAGTTGGAGGTGGTTGTCGGAATGGCCACGATTTTGAATCACAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACCGAGCCGGATCTGATGTATCATAAGGGATTTGCCCTTTCTATTGATTCCTCCGGATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATCGAAAAATAAATCTTTATTGGTTCTACCCCCATAG 1416 0.4703 MVCWVRGKCIGKGAFGTVNIAVAKSNGQVFAVKSVDRKTGLPGQVEALENEIKILRRLDSPHVISFLGDDVTCESTTSYRNLHIEYMPGGNVADMDRAYVDEVLVKRYTWCLVHALRHVHELGVVHCDVKGRNVLLAGDGSVAKLADFGSAVEFNHATGILPRGSPMWMSPEVIRREYQGPESDVWSLGCTVIEMFTGKTPWKDDGVDTLNRIGFSSALPEFPNALSELGRDFLEKCLRREAKERWSCNQLLQHPFLQIESFTKVSESSPRCILDWFESEEEKMELDSENSGKGRIGKLDTGIRANWEIQGWVEVRAIESSELESSTTTAGFDEERGVNWEFGNVARVEKEMEIGSRLEYWDSGKFGTSKNERVKREMPRIRRLVWRWCRNRKKRVIVGGGCRNGHDFESQERFQEMADLFTLSITEPDLMYHKGFALSIDSSGLDQKQFLNEVFNSRDESKNKSLLVLPP* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1204 471 Pfam Plant protein of unknown function (DUF825) 401 471 IPR008543 -
Lan9g1204 471 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1204 471 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 342 - -
Lan9g1204 471 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lan9g1204 471 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 2 342 - -
Lan9g1204 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan9g1204 471 SUPERFAMILY Protein kinase-like (PK-like) 4 258 IPR011009 -
Lan9g1204 471 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1204 471 CDD STKc_MAPKKK 4 257 - -
Lan9g1204 471 Gene3D Transferase(Phosphotransferase) domain 1 4 302 - -
Lan9g1204 471 Pfam Protein kinase domain 6 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1204 Lan-Chr9 19368630 19370496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1204 4 316 MAP Kinase Kinase Kinase AT2G30040 59.627 1.14e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan9g1204 Pkinase 1.4e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1204 - - mtr:MTR_5g071560 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1009 2 21156297 21157968 Lan9g1204 9 19368630 19370496 LSH
Lan11g0382 11 2782180 2783859 Lan9g1204 9 19368630 19370496 LSH
Lan2g1009 2 21156297 21157968 Lan9g1204 9 19368630 19370496 PCT
Lan9g1204 9 19368630 19370496 Lan2g1009 2 21156297 21157968 PCT
Lan9g1204 9 19368630 19370496 Lan11g0382 11 2782180 2783859 PCT
Lan9g1204 9 19368630 19370496 Lan9g1204 9 19368630 19370496 PCT
Lan11g0382 11 2782180 2783859 Lan9g1204 9 19368630 19370496 PCT