Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1203 ATGTCGTGCTCCGTCGCGGTTTCAAACTCGCCGGTGTTCTCAACCTCTTCTCTTTTTTGTACCAAACCTTCTATCGTATCTTCTTCTCCTGATTCTCATACCCTTTCTCTTTCTCATCTCAAACCCTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTAATTCTACTTCTTCTCCGTCTTCACCTTTTCGGTTTCGCCTTTCTAAGCCTCTTATTGCTTCATCTACCTCCCCAAACGGCCCCGTTTTGAAGAGGAAGAGGCCGGCGAGGCTTGATATACCAGTTTCTTCTCTCAGCGTTGAGGTTCCGGCGACGTCGTCTGCGGTGGCTAGCGATGTGGTGGAGGATGAAGGAGATGGGTTTTCTGTGTACTGTAAGAGAGGAAGGAGGGAGTATATGGAGGATCGTTATTCTGCTGCTGATAATCTACTCGGTGAATCAAAATTTGCTTTTTTTGGGGTATTTGATGGGCATGGAGGTTCAAGAGCCGCAGAATTTGCTGCAAAGAACTTAAAAGATAATGTCTTAAATGAAGTGAGCACTACTGAGGAAGAAGATATCCAGGAGGCGGTGAAGCGTGGTTACCTCAACACTGATTCCGATTTCTTAAAAGATGATCTCAATGGTGGTTCTTGCTGTGTAACAGCACTGATTAAGAACGGTAACCTTGTGGTGTCCAATGCTGGTGATTGTCGTGCTGTCATAAGCAGAAACGGTGTTGCAGAGGCCCTAACATCTGATCACCGACCTTCAAGGGGCGACGAAAGGGACAGAGTTGAGACTCTGGGTGGCTATGTTGATTTATGCCGTGGTGTTTGGAGGATTCAAGGATCTCTGGCTGTATCTAGGGGAATCGGAGATCGTCATCTGAAACAGTGGGTGACAGCAGAACCCGAGACCAAAGTTCTTAGAATTGAACCTGAACATGACTTATTAATCTTAGCTTCAGATGGATTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGATATTGCTCGTCCTTTTTTCGTAGGGAACAAGAAATCGCAACCATTACTGGCTTGTAAACGGCTTGTGGATTTTTCAACTTCCAGAGGCTCTATTGATGATACAAGTGTTATGCTAATTAAGTTGGAGCACTATATTTGA 1125 0.448 MSCSVAVSNSPVFSTSSLFCTKPSIVSSSPDSHTLSLSHLKPSSSSSSSSPSNSTSSPSSPFRFRLSKPLIASSTSPNGPVLKRKRPARLDIPVSSLSVEVPATSSAVASDVVEDEGDGFSVYCKRGRREYMEDRYSAADNLLGESKFAFFGVFDGHGGSRAAEFAAKNLKDNVLNEVSTTEEEDIQEAVKRGYLNTDSDFLKDDLNGGSCCVTALIKNGNLVVSNAGDCRAVISRNGVAEALTSDHRPSRGDERDRVETLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNQEAVDIARPFFVGNKKSQPLLACKRLVDFSTSRGSIDDTSVMLIKLEHYI* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1203 374 SMART PP2C_4 109 368 IPR001932 -
Lan9g1203 374 CDD PP2Cc 119 370 IPR001932 -
Lan9g1203 374 SUPERFAMILY PP2C-like 120 371 IPR036457 -
Lan9g1203 374 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 373 - -
Lan9g1203 374 MobiDBLite consensus disorder prediction 28 62 - -
Lan9g1203 374 Pfam Protein phosphatase 2C 120 362 IPR001932 -
Lan9g1203 374 Gene3D - 108 373 IPR036457 -
Lan9g1203 374 ProSiteProfiles PPM-type phosphatase domain profile. 119 370 IPR001932 -
Lan9g1203 374 ProSitePatterns PPM-type phosphatase domain signature. 150 158 IPR000222 GO:0043169
Lan9g1203 374 PANTHER PROTEIN PHOSPHATASE 2C 3 373 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1203 Lan-Chr9 19359043 19361324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1203 1 374 PP2C-type Phosphatase Gene Family AT2G30020 62.469 2.48e-158 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1203 K17506 - gmx:100797934 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1008 2 21143834 21146069 Lan9g1203 9 19359043 19361324 LSH
Lan11g0383 11 2792905 2795104 Lan9g1203 9 19359043 19361324 LSH
Lan2g1008 2 21143834 21146069 Lan9g1203 9 19359043 19361324 PCT
Lan9g1203 9 19359043 19361324 Lan2g1008 2 21143834 21146069 PCT
Lan9g1203 9 19359043 19361324 Lan11g0383 11 2792905 2795104 PCT
Lan9g1203 9 19359043 19361324 Lan9g1203 9 19359043 19361324 PCT
Lan11g0383 11 2792905 2795104 Lan9g1203 9 19359043 19361324 PCT