Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1186 ATGCCTTCCATCGCCGTCAATTCAACTCCTCAGAAGCGCAAATCGAGATCTCATGTCGCGCCTTCGGAGGCTCCGGTCTCTTCCCCGTGCAAACGGAGACTTCCGCAGCGGTGCAGCAATGTGAGCCTTCTCACTTCTGTAACTGAAAATGACGTTGTTTCGATTCCTTGTGGTCATAAACAAGCTGATTCGGAAAATGTTGCTGCCAAATTGGAATGGCATTGCAAAGGTAGTGAGCAATTGCGGGTGGTGAAGGAGAAGTTGCATGTGTCCACTGAACCTTCTAGAATTGCGTGCCGTGAGGATGAGCAGAATATGGTGTTGGAGTTTTGCAAGGCATGTGTTGAGCAAGAGAAGGCTGGAAGTTTGTACATTTGTGGATGTCCTGGAACTGGAAAATCGTTAACTATGGAGAAAGTGAAAGGGCTCTTACTCAATTGGGCTACAGAGGCAGGTTTTGCCCGACCAGATGTTTTATCTGTAAACTGTACTTCATTTGTCAACACATCTGACATTTTCACCAAGATACTTGAGTTTAACCAGTCAGTTGGGAAAAAGCTTTCAGCAACACCCTTAAAACAACTCCAGAACATGTATTCTCAGAAGTCATCTAGAAAGAACATGATGTTGATACTTGCTGATGAATTAGATTATCTAATAACCAAAGACCGGGCTGTGCTCCATGATCTTTTCATGCTCACTACCTTACCATTTTCCAGATTTATATTAATAGGGGTAGCAAATGCGATTGACCTAGCTGATCGTTTTCTTCCAAGGCTTGCATCATTAAACTGCAAACCTATTGTTGTGACTTTTCGTGCATACTCTAAAGATCAGATCCTTAGGATTCTACAAGAAAGACTAAGTGAACTTCCTTACAGTGTCTTCCAACCGCAAGCACTGGAACTATGTGCTAGGAAAGTTGCGGCAGCCTGTGGAGATATGCGGAAAGCCCTTTGCATATGCAGGAGTGCAGTAGAGATGCTAGAAGCTGAGATTAAAGAATCTACCAGCAAGTCAAATACTTCAGTGGAAGAGAAAGCATCATCTGAGTTGAAGACTACCACAACTTCTGATTATACCATGAAACATGAATTTGACACTGTAAGGATTGATCATATGGCTCTTTCTCTGTCGAAGACATATAGATCACCTGTGGTGGACACAATACAATCTTTGCCTCTTTATCAGCAGATTGTACTCTGCTCATCAATGAAACATTTCTGTGGAACTAAGAAAGATACAATCCTTGGCGAGTTGTATAAATCTTACACAGGAATATGCAAATCATCACAAATTCAACCGGCTGGATTCTTGGAATTTTCAAATATGTGCAGAGTGCTTAATGACCAGGGGCTCATTAAACTGGGACAATCCCGAGAGGATAAATTGAAAAGGGTGACACTAAAAGTAGATGAAGCTGATATTACTTTTGCACTACAGGGAATCCGTTTTTTTCAAAACTGTCTTCAATGA 1476 0.4194 MPSIAVNSTPQKRKSRSHVAPSEAPVSSPCKRRLPQRCSNVSLLTSVTENDVVSIPCGHKQADSENVAAKLEWHCKGSEQLRVVKEKLHVSTEPSRIACREDEQNMVLEFCKACVEQEKAGSLYICGCPGTGKSLTMEKVKGLLLNWATEAGFARPDVLSVNCTSFVNTSDIFTKILEFNQSVGKKLSATPLKQLQNMYSQKSSRKNMMLILADELDYLITKDRAVLHDLFMLTTLPFSRFILIGVANAIDLADRFLPRLASLNCKPIVVTFRAYSKDQILRILQERLSELPYSVFQPQALELCARKVAAACGDMRKALCICRSAVEMLEAEIKESTSKSNTSVEEKASSELKTTTTSDYTMKHEFDTVRIDHMALSLSKTYRSPVVDTIQSLPLYQQIVLCSSMKHFCGTKKDTILGELYKSYTGICKSSQIQPAGFLEFSNMCRVLNDQGLIKLGQSREDKLKRVTLKVDEADITFALQGIRFFQNCLQ* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1186 491 SUPERFAMILY "Winged helix" DNA-binding domain 386 489 IPR036390 -
Lan9g1186 491 SMART AAA_5 119 266 IPR003593 -
Lan9g1186 491 MobiDBLite consensus disorder prediction 1 15 - -
Lan9g1186 491 PIRSF Cdc6 3 491 IPR016314 GO:0006270|GO:0051301
Lan9g1186 491 Pfam CDC6, C terminal winged helix domain 401 479 IPR015163 -
Lan9g1186 491 CDD AAA 103 260 - -
Lan9g1186 491 Pfam AAA domain 118 236 IPR003593 -
Lan9g1186 491 Gene3D - 386 481 IPR036388 -
Lan9g1186 491 MobiDBLite consensus disorder prediction 1 31 - -
Lan9g1186 491 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 7 490 - -
Lan9g1186 491 CDD Cdc6_C 394 476 IPR015163 -
Lan9g1186 491 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 7 490 - -
Lan9g1186 491 SMART Cdc6_C_2 401 480 IPR015163 -
Lan9g1186 491 Gene3D - 77 264 IPR027417 -
Lan9g1186 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 336 IPR027417 -
Lan9g1186 491 Pfam AAA lid domain 297 332 IPR041083 -
Lan9g1186 491 Gene3D - 265 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1186 Lan-Chr9 19227383 19234182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1186 26 490 Core DNA Replication Machinery Family AT2G29680 57.884 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1186 K02213 - gmx:100791200 664.84