Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1178 ATGGTTCTTCAGAATGATATTGATTTGCTTAATCCACCAGTTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTTGTTCAGACCCCAAATTCCTTCTTCATGGATGTTAAGTGCCAAGGTTGCTTCAATATAACCACTGTGTTTAGCCACTCTCAAACAGTTGTAGTGTGTGGAAACTGCCAAACTGTTTTATGCCAACCAACCGGAGGAAAGGCGAGGCTTACCGAAGGATGCTCTTTTAGGAAGAAGGGAGATTGA 261 0.433 MVLQNDIDLLNPPVELEKRKHKLKRLVQTPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1178 86 Gene3D - 5 85 IPR023407 -
Lan9g1178 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lan9g1178 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Lan9g1178 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lan9g1178 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Lan9g1178 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lan9g1178 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1178 Lan-Chr9 19169529 19183382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1178 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 5.80e-59 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1178 K02978 - thj:104816698 174.866