Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1174 ATGGGTTACTTATGTGATTTTTGTGGAGACCAAAGGGCCGTGGTATACTGCCGCTCTGATGCTGCATGCTTATGTTTGTCGTGTGATCGAAATGTTCATTCGGCTAATGCCCTTTCAAGGCGTCACTCGAGGACCCTTGTATGTGAGAGATGTAACTCAGAACCTGCATCTGTTCAGTGTACTGAAGAGAGCATTTCACTTTGTCAAAACTGTGATTGGTTGGGCCATGGTACTGCATCATCTTCTTCAACACATAAGAGGCAAACAATCAATTGCTACACTGGCTGCCCTTCATCGGCCGAACTTTCTTCGATATGGTCCTTTTTCTCAGATATTCCCTCTATGGGTGAAAAATGTGAGCAAGAACTAGGTTTAATGAGCATCAATGAGAACAGAAACAATAGTACTTGGGTTCCTTTAGAAAGCCAGAATGTGTCTGGTTCACCTCAAGTGACTGATCTTCCCAGCAAGGACAGATCTTCGGTTGGTGCATCTTCAATGCCCGAGTCAAGCTCAAAACCTCGTCTTCCGGATCAACAGCCAGAATCTGCCGATGAATGTATTCCAAAGTTAAACTGGTCCGGAAAAAAATCTCCTGGAATATTTGAAGATGATGATCTATATAACGATTTCAACATGGATGAAGTTGACCTAGAGCTTGAGAACTACGAGGAACTTTTTGGCATGACTCTGAGTCATTCTGAAGATCTTTTTGAAAATGGTGGGATTGATAGCTTATTTGGGACAAAAGAAGTGGCTGCTAGTGCTGGTAATTCCAATTGTCAGGGTGCTGTTGCTGCTGAGGGATCATCGATTGGATTGGTCAATGCGGTGCAGCCAGCATGCAGCAATGCTGCATCTGCAGATTCAATGTTGAGTTCTAAAACTGAACCGTTTCTTCGTATTACGGGAAGGCAATCTCAATCAAACATTTCATTTTCTGGCATATCCAAAGATAGTAGTACTGGTGACTATCAAGAGTGCGGGGCTTCTTCAACGCTTCCTATAGGAGAGCCTCCCTGGTATTCTCCTTGCCCTGAGAGCTCTCTGCAATATGCTAGCCGCAGCAATGCTGTCATGCGTTACAGGGAAAAGAAAAAGGCGCGAAAGTTCGAGAAAAGTGTAAGGTACGCCTCTCGCAAAGCCAGGGCTGATATCAGGAAGCGTGTGAAGGGACGGTTTGTGAAAGCTGGTGATGTTTATGACTATGATCCTTTGAGCCAAACCAGAAGCTACTAA 1239 0.4447 MGYLCDFCGDQRAVVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSEPASVQCTEESISLCQNCDWLGHGTASSSSTHKRQTINCYTGCPSSAELSSIWSFFSDIPSMGEKCEQELGLMSINENRNNSTWVPLESQNVSGSPQVTDLPSKDRSSVGASSMPESSSKPRLPDQQPESADECIPKLNWSGKKSPGIFEDDDLYNDFNMDEVDLELENYEELFGMTLSHSEDLFENGGIDSLFGTKEVAASAGNSNCQGAVAAEGSSIGLVNAVQPACSNAASADSMLSSKTEPFLRITGRQSQSNISFSGISKDSSTGDYQECGASSTLPIGEPPWYSPCPESSLQYASRSNAVMRYREKKKARKFEKSVRYASRKARADIRKRVKGRFVKAGDVYDYDPLSQTRSY* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1174 412 CDD Bbox1_BBX-like 4 47 - -
Lan9g1174 412 MobiDBLite consensus disorder prediction 138 192 - -
Lan9g1174 412 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Lan9g1174 412 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Lan9g1174 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 412 - -
Lan9g1174 412 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lan9g1174 412 CDD Bbox1_BBX-like 47 90 - -
Lan9g1174 412 Pfam CCT motif 355 397 IPR010402 GO:0005515
Lan9g1174 412 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lan9g1174 412 SMART bboxneu5 48 90 IPR000315 GO:0008270
Lan9g1174 412 MobiDBLite consensus disorder prediction 138 178 - -
Lan9g1174 412 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lan9g1174 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1174 Lan-Chr9 19160356 19164647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1174 1 412 C2C2-CO-like Transcription Factor Family AT3G07650 53.176 6.07e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan9g1174 CCT 5.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1174 - - gmx:100783016 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0985 2 20922292 20926639 Lan9g1174 9 19160356 19164647 LSH