Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1160 ATGGAAACTTTGGATGTTAATTCAGAGCAATATGCTACCATGTCTTCTAATTCATCATCATCTTCTTCTGGAGGTGTTAATAGTAGTGATAACAATGTTAATAGTAATAGTAGGGCTGGCACTGTAACCTGGTATGGCATGAATTTACCCTCTGTGAGAACTTTGCGTTCTCCAATTTCCTTTTTGTTGGAGAACTCTGGCATCTTAACCTCAGCCCCTGATTCTGAGGCTGTGACTGTCAACAACGGGGTTACGGGTTCGGAGTTACGGTCTCAGCTTCAAACTCAATCACTCCATGGTGGTGGTGCTTCAGCTGCTGCTGTTGGAACACCCTGCACCAATAGTGCTGGTGAGGTTGCAATAAGGATCATTGGATCTGGAGAGAATGATCACAGTGTAGTAGGGTCTGGTTCTCTTTCATCATCGTCATGGAATCGGCGTGGAGAAGTTGGTTATGGTGGATATGATGATGTCGTGAGGGATAGAGATGGAATGCATGGGTTGGTTGATGGTGGTGGTGAGGATCATGGTGGAATTTCGGCTAGTGAGAGGGTTCCTCGTGTGTCTTCATCTTCATCTTTGGCTGGTAGTGGACAAGTTGGTGGAGAGGCTGCTGGGAATGGCTTAGAAAGTAACGGTAGGGAGTTGTCGTCCTACCAGAGGTATGACATTCAGCAGATTGCAAAGTGGGTTGAGCAGATTCTGCCTTTCTCGCTCTTGTTGTTCGTTGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGGTATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAGGCAGACAGCTTTAAAGGGAGATAGGAAAATATCTATCCTTGTTGGTATCTCAGTTGCCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCGCTGGTCATGATTCCCCCAAAAGCCACACCTTTTTGGCATTCAATATTCATCATTTTGGTTAATGATACATTGGTGCGGCAAGCAGCAATGGCTTTCAAGTGTTTTCTGCTTATATATTACAAAAATGGCAGAGGTCAAAACTTCCGTCGGCAGGCTCAAATGTTGACTCTGGTTGAGTACACGTTGCTGCTGTATCGTGCCTTGCTGCCCACACCAGTTTGGTACCGGTTTTTCTTGAACAAGGATTATGGCAGTCTCTTTTCGTCACTGACCACTGGGTTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTTAAATGCTTTTTTTCTGCCGTGAAAGCGCTATCAAGAAAGGATGTCAACTATGGGGTTTGTGCCACAATGGAACAGGTTAATGCCGCTGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATGCTCCCATCTTGTTGCGCTGTAAACACATTTTCTGCGAAGAGTGTGTGTCAGAATGGTTTGAGAGAGAAAGGACATGCCCACTCTGTAGAGCATTGGTAAGACCTGCTGATCTGAAGACCTATGGAGATGGATCTTCAAGTCTCCTATTTCAGTTGTTTTAA 1539 0.4425 METLDVNSEQYATMSSNSSSSSSGGVNSSDNNVNSNSRAGTVTWYGMNLPSVRTLRSPISFLLENSGILTSAPDSEAVTVNNGVTGSELRSQLQTQSLHGGGASAAAVGTPCTNSAGEVAIRIIGSGENDHSVVGSGSLSSSSWNRRGEVGYGGYDDVVRDRDGMHGLVDGGGEDHGGISASERVPRVSSSSSLAGSGQVGGEAAGNGLESNGRELSSYQRYDIQQIAKWVEQILPFSLLLFVVFIRQHLQGFFVTIWVSAVMFKSNEIVKRQTALKGDRKISILVGISVAFMLHVMCIYWWYRNDDLLYPLVMIPPKATPFWHSIFIILVNDTLVRQAAMAFKCFLLIYYKNGRGQNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVKCFFSAVKALSRKDVNYGVCATMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVRPADLKTYGDGSSSLLFQLF* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1160 512 ProSitePatterns Zinc finger RING-type signature. 466 475 IPR017907 -
Lan9g1160 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 499 IPR013083 -
Lan9g1160 512 SUPERFAMILY RING/U-box 442 494 - -
Lan9g1160 512 CDD RING-HC_RNFT1_like 450 489 - -
Lan9g1160 512 Pfam Zinc finger, C3HC4 type (RING finger) 449 491 - -
Lan9g1160 512 SMART ring_2 451 488 IPR001841 -
Lan9g1160 512 MobiDBLite consensus disorder prediction 172 209 - -
Lan9g1160 512 MobiDBLite consensus disorder prediction 184 198 - -
Lan9g1160 512 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 15 512 - -
Lan9g1160 512 ProSiteProfiles Zinc finger RING-type profile. 451 489 IPR001841 -
Lan9g1160 512 MobiDBLite consensus disorder prediction 1 34 - -
Lan9g1160 512 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 15 512 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1160 Lan-Chr9 19005783 19011093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1160 55 512 C3H Transcription Factor Family AT5G01960 59.524 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1160 - K22379 ming:122058364 569.696