Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1158 ATGGGTAGAAAGAAAAGTAAACCTCGTCGATCAGGTGGGATAATACTAAAAACAAATGCTGCTGATACAGAATTGGATAAACAGAATGTTGAAGGAACTAGTGAAGAAGCAAAGGATGATTTTGGTGACATTTATAAGTCTTATTTTGTTGAAATTGATCGGTCCGGTTGGTCGCCAAGTGAACACCTTGATATTTCTGAGGTTGTTTTAAGGGATTTAAATGTAAGAGAAGGACTTTCTGGTTTTGAACTTCCTCAGAATTTTTATCAGGATCCACAGTACTTGTTAAGATTTCGGGTGTGTAATGTCAACAGTGTTCTCAGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCGTATACTGATATTCATCTAGAGTTAGTGAAAAGAGTAACCGTGGACAATGTAGAAACATGTACAGTATTGTTGTCTGGGATTTTTGATGGATCTGATGAAGGTGTTTCTGGTCTTATTCACTTGGCAAGTTTGAAAGTTGTTATGTTGAGGCCAATTCTTGGGATTAGGCTTTCTGAGGATACTCCTTCCATCAGGGTAAGGGTTGAGCTACTGAAGAGTGCCTTTGATGCATGCGAGTCACTTCTTGACAGTTCTAGGCAACTCTGGAAAAGGAGTATGATGAATGTCATGTCTTGGCTACATCCAGAAATATTGACTTCAGAAGTTAGGTATGGGTTCGGTAGCTGCATGAAAATGGAAGTTGATCCACAGACAGAGATTGGAGATGACACTAGCTACACCAAAAAACATGCAAGGTTTGATCCTGCAGGTTTTTATGAAGCCATTAAACCTTCGAAAGCAGAACCAGTGCTCAAAGATGACATACCTGAGTTACTTCCTGAACTGAGGCCATATCAACGGCGTGCTGCTTTTTGGATGATAAAGCGGGAGAAAAGAATTGAAGAAAGTCAGGGTGAAAGAGAAAGAATACAGTTTCACTCTCCATTATGCGTGCCTGTGGATTTTCTGGAGACAAATTCTAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTGCTCACCGTAGATCAGCATCTGGAAATGATGTACTAATTGATTCAGTGCCCCAAGTTAATGAGGACCAAAATGTTACTTTAAAAAGACTCAAAAAAGAGCGTGTGGAGTGCATATGTGGCGCTGTAAGCGAAAGTTTCAAATACCAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGAATGTGTTGGTTATTCACCTAAAGGGAAGTCTCTGAAATCAAAACGGGGATGCGAGAGCAAGACATATAAAACCACCATAGCTGAGAGGGATGGGGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGCTACTCAATCTCCTATTGCCTCTGGTGCAACTCTTATTGTCTGCCCAGCTTCTATTTTACCCCAATGGCGCGATGAAATTATACGTCATACACGTCCGGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGACACATCTTTGTCCTATACATCTCTGGTGGATATCAATGAACTTGTCAATGCTGACATTGTAATAACTACATATGACGTGCTTAAAGAGGATCTTTCCCATGATTCTGATCGACTAAAGGGTGATCGGCACCTTTTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTCCTTACCAGAATATACTGGTGGAGGATTTGTTTGGATGAGGCTCAAATGGTGGAAAGCAACGCTGCTGCTGCCACTGAAATGGCGTTGAGACTCCATTCAAAGCATCGTTGGTGCATTACTGGGACCCCAATTCAGCGGAAGCTTGATGATTTATATGGACTTCTTAGATTCCTAAAAGCTAGTCCTTTCAATATATACAGGTGGTGGACTGAAGTTATCCGAGATCCTTATGAGAAGGGTGATATAGGAGCTATGGAATTCACGCATAGAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAGGAACACGTTTCAGATGAATTGGATCTTCCATCTCAGGAGGAGTGCCTCTCATGGCTTTCACTCTCACCAGTAGAAGAGAACTTTTACCAGAGGCAACATGAAACTTGTCTTAGAGATGCCCATGAAGTTATTGGAAGTTTGAGAAATGATATTCTTAATAGAAGAGACCAGGGTTCTGTATCTATTAATGGGCCCTCTGATCCTTTAATCACTCATACAGAGGCAGGAAAGCTACTAAATGCTCTTCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGTTTGCGTTCCCTACAGCAGACGCCCATGACCATGGAGGAAATATTAATGGTTCTCATAAGTAAGACTAAGGTAGAAGGTGAGGAAGCTCTTAGGAGGTTAGTTGTTGCCCTTAATGGGCTTGCAGCGATAGCTACAATACAAAGAGATTTTTCACAAGCGGCATTACTGTACAATGAAGCTCTAACTTCTGCTGAAGAGCATTCTGAAGATTTTCGTGTGGATCCTTTATTAAATATCCACACTCATCATAATCTTGCTGAAATACTTCCACAGGCTGCTAATGTTCCTTTAGTATTGCCCTGCAATGGAAAGAAATTCTCTGGAAGTTTTGCTGTTAAGACAACCAAAAAGCATTGTTTTGTAAATGTTGATCATCATCTTGACAAGAGGCAAAAGGTAAGTGCCTGTGGCGACACAAATTTCCCAGTGGCTTCTGCAGAACCATCAGATGTTATGTCTAGCCTATCGGAAAATGACTTCAAGGAGGATCAGGAATTTGATAATTTATCTGTCAGTTCTGTCAAATCTCTGATAACAGAATGTGAAGATTTAAAGCAGAAATACTTAACCGTGTTCAAATCAAAGCTATCTGCAACTCAACAGGAGTTTCAAAATTCGTACACGCAGGTTTGTAATGCATATAGAGACAGAAGAATAGATCAAAATGCATTTTGGTGGCTGGAAGCACTTCATCATGCTGAACAGAACAAGGATTTTTCAACTGAATTGATTAGAAAGATTGAAGAAGCCATGTCAGGAACTTCAGACAATTCAAAGCCATCAAAAATAGCCTCTCGTCTCCGGAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGGCTCTAGGAAAGTGCTACTAGATCGACTGTTAGAAGTTGATCAGACAATGGAGAAGCCAAAAGAAGATGATATCGAACGCGTGGGTAAATGTCAAAATTGTCAACCTAATTGTGATGGTCCCCCATGCATTCTGTGTGAACTCGACGAATTGTTTCAGGATTATGAAGCAAGACTCTTTGTCCTTAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAAATTAGCACTAAATCATTTCCTCTCAAAACTATCACAATCTAATCACAGTTCAACAGCAACCGAGCTTGGTAATGAAGAAGAATCCAAAAAAAGGAATGTTGGACAGAGAGTTGTGGTTTCAAGGTCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTATAAAGAGCTATTGCAAAACTCGGCTAGGAAGGGATAGTGTCTCAGCAGCCACCAAGCATTTACAAGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCTAGGTCATTGGCATTAGCTCAAGCTCAATATCTACGAGCCCATGATGAAATAAAGATGGCGGTTACCCGTTTGCACTTAAGGGTAAATGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAACGAACTATTTGCCGCTAGCTCAAGCTTTTCCCACGATAAGTTTATATCATTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTGCAAGCTAAGCAAAAACTGACATCGGAAAGTCCAGATAGTTCTTCATTCACTCAAGGGGCAACTGCAATGTCAAACTCTACGGAAGAGACGGGCACACTCATATCTAAAGCTGAAGATGAAACATGCCCAGTTTGTCAAGAAAAGCTTGGCAATAAAAAAATGGTATTTCAATGTGGGCATATTATGTGTTCTAAATGTTTATTTGCTATGACTGAGAAAAGGCTTCAAGATAGCAAGTCTCCTAATTGGGTGATGTGCCCAACATGTCGCCAACATACCGATTTTGGAAACATTGCCTATGCTGTTGATGTACAGAACGAATCTTCCAATTCTTCAGTGCTGCATACAATTGACAGCTCTGAAAAATGTGAAGCGTCCATAAGTGTTAAAGGGTCCTATGGAACTAAGATTGAAGCCGTTACCAGAAGAATCTTGTGGTTAAAGGCTAAAGATCATAAAGCAAAAGTTCTTGTGTTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCCTTTGCGGCCAATAACATCACCTTCATCCGGATGAAAGGGGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAAAAGGATGTGAGAGTTCAACATCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGTGCCAATGGCCTCAATCTTTTAGAAGCACAGCATGTGGTCCTTGTAGAGCCATTGCTCAATCCTGCTGCTGAAGCACAAGCAATCAGTCGTGTTCATCGTATTGGACAAAAACATAAGACCCTCATTCATCGTTTCATTGTGAAAGACACAGTTGAAGAGAGCATATACAAATTGAACAGAAACAGAAGCAACCATCCATTCATTAGTGGGAACACCAAAAATCAAGATCAACCTGTTTTGACCCTCAAGGATGTAGAATCATTACTGGAAAGATCCCCATTAACTATGCCAGAAAGTGATGAAAATCCCAACACAGATACAAATCTAAGGCACTTGCCACCATCAATGGCAGCAACTATTGCTGCTGAGAGGAGAATCAATGAGCAAAGGACATGA 4998 0.4064 MGRKKSKPRRSGGIILKTNAADTELDKQNVEGTSEEAKDDFGDIYKSYFVEIDRSGWSPSEHLDISEVVLRDLNVREGLSGFELPQNFYQDPQYLLRFRVCNVNSVLSRIKLGHWPVLPYTDIHLELVKRVTVDNVETCTVLLSGIFDGSDEGVSGLIHLASLKVVMLRPILGIRLSEDTPSIRVRVELLKSAFDACESLLDSSRQLWKRSMMNVMSWLHPEILTSEVRYGFGSCMKMEVDPQTEIGDDTSYTKKHARFDPAGFYEAIKPSKAEPVLKDDIPELLPELRPYQRRAAFWMIKREKRIEESQGERERIQFHSPLCVPVDFLETNSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSASGNDVLIDSVPQVNEDQNVTLKRLKKERVECICGAVSESFKYQGLWVQCDICDAWQHAECVGYSPKGKSLKSKRGCESKTYKTTIAERDGEYVCQMCSELIQATQSPIASGATLIVCPASILPQWRDEIIRHTRPGSLKTCVYEGVRDTSLSYTSLVDINELVNADIVITTYDVLKEDLSHDSDRLKGDRHLLRFQKRYPVIPTLLTRIYWWRICLDEAQMVESNAAAATEMALRLHSKHRWCITGTPIQRKLDDLYGLLRFLKASPFNIYRWWTEVIRDPYEKGDIGAMEFTHRVFKQIMWRSSKEHVSDELDLPSQEECLSWLSLSPVEENFYQRQHETCLRDAHEVIGSLRNDILNRRDQGSVSINGPSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKVEGEEALRRLVVALNGLAAIATIQRDFSQAALLYNEALTSAEEHSEDFRVDPLLNIHTHHNLAEILPQAANVPLVLPCNGKKFSGSFAVKTTKKHCFVNVDHHLDKRQKVSACGDTNFPVASAEPSDVMSSLSENDFKEDQEFDNLSVSSVKSLITECEDLKQKYLTVFKSKLSATQQEFQNSYTQVCNAYRDRRIDQNAFWWLEALHHAEQNKDFSTELIRKIEEAMSGTSDNSKPSKIASRLRSISSLKYQIQTGLDQLEGSRKVLLDRLLEVDQTMEKPKEDDIERVGKCQNCQPNCDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKKLALNHFLSKLSQSNHSSTATELGNEEESKKRNVGQRVVVSRSASELELILGVIKSYCKTRLGRDSVSAATKHLQVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVTRLHLRVNEDDKSLDALGENELFAASSSFSHDKFISLTLLSQIKGKLRYLKGLVQAKQKLTSESPDSSSFTQGATAMSNSTEETGTLISKAEDETCPVCQEKLGNKKMVFQCGHIMCSKCLFAMTEKRLQDSKSPNWVMCPTCRQHTDFGNIAYAVDVQNESSNSSVLHTIDSSEKCEASISVKGSYGTKIEAVTRRILWLKAKDHKAKVLVFSSWNDVLDVLEHAFAANNITFIRMKGGRKAHVAISQFRKGCESSTSKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKHKTLIHRFIVKDTVEESIYKLNRNRSNHPFISGNTKNQDQPVLTLKDVESLLERSPLTMPESDENPNTDTNLRHLPPSMAATIAAERRINEQRT* 1666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1158 1665 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 464 649 IPR014001 -
Lan9g1158 1665 SMART helicmild6 1483 1569 IPR001650 -
Lan9g1158 1665 SMART PHD_3 413 481 IPR001965 -
Lan9g1158 1665 ProSitePatterns Zinc finger PHD-type signature. 414 480 IPR019786 -
Lan9g1158 1665 MobiDBLite consensus disorder prediction 1169 1188 - -
Lan9g1158 1665 Gene3D - 345 396 IPR038718 -
Lan9g1158 1665 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1646 - -
Lan9g1158 1665 CDD DEXQc_SHPRH 288 687 - -
Lan9g1158 1665 ProSiteProfiles Zinc finger RING-type profile. 1358 1406 IPR001841 -
Lan9g1158 1665 MobiDBLite consensus disorder prediction 1631 1646 - -
Lan9g1158 1665 Pfam Zinc finger, C3HC4 type (RING finger) 1358 1405 IPR018957 GO:0046872
Lan9g1158 1665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 1622 IPR027417 -
Lan9g1158 1665 CDD PHD_TCF19_like 415 480 - -
Lan9g1158 1665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 480 IPR013083 -
Lan9g1158 1665 MobiDBLite consensus disorder prediction 1626 1648 - -
Lan9g1158 1665 CDD SF2_C_SNF 1449 1580 - -
Lan9g1158 1665 ProSitePatterns Zinc finger RING-type signature. 1374 1383 IPR017907 -
Lan9g1158 1665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 681 IPR027417 -
Lan9g1158 1665 SMART ring_2 1358 1405 IPR001841 -
Lan9g1158 1665 Gene3D - 1421 1656 IPR027417 -
Lan9g1158 1665 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1455 1620 IPR001650 -
Lan9g1158 1665 SUPERFAMILY RING/U-box 1352 1410 - -
Lan9g1158 1665 Pfam Helicase conserved C-terminal domain 1455 1569 IPR001650 -
Lan9g1158 1665 SUPERFAMILY FYVE/PHD zinc finger 410 483 IPR011011 -
Lan9g1158 1665 Pfam SNF2-related domain 291 783 IPR000330 GO:0005524|GO:0140658
Lan9g1158 1665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1339 1420 IPR013083 -
Lan9g1158 1665 MobiDBLite consensus disorder prediction 1325 1345 - -
Lan9g1158 1665 SMART ultradead3 284 656 IPR014001 -
Lan9g1158 1665 Gene3D - 481 708 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1158 Lan-Chr9 18966160 18977163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1158 488 781 RAD5 or RAD16-like Gene Family AT5G22750 31.208 2.41e-36 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan9g1158 SNF2_N 5.7e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1158 K15710 - gmx:100776659 2779.59