LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan9g1152	ATGCAACTGAGATTTTTAATATCCTTCAATATGTCATCTCGACCAGTGCAGTTGTGGATAAAGGGCAATCATGTGGTCATGGACAATGGGATACTGCAAGTGTACTTATCGAATCCGGGTGGATTTGTCACTAGAATACAATATAATGGCATTGATAATATACTAGAAGATCTTAATGAAGATTTTAATAGAGGATATTGGGACATTGTTTGGAGTGAATCAGGAAGTACAGGAACAACTGGAACATTTGAGAGAATTGTAGGAACAAACTTTAAGGTTATAGTGGAAAATGAGGAACAAGTTGAAATATCATTTACAAGAATGTGGGATCCATCTCTGAAGGGAAAGCTTTCAGCTGTAAATATTGACAAAAGGTATGTGATGCTCCGAAATTCCTCAGGCTTCTACTCTTATGGCATCTTTGAACACCTTAAGGAGTGGCCTGCTTTCAACATACCTCAGATTCGGATTGTTTTTAAGCTTCGAAAAGACAAGTTTCATTATATGGCAGTGGCAGATGATAGACAAAGATTCATGCCTCTCCCAGATGATAGATTACCTAGAAGAGGTGAAGAACTAGTTCCTCCAGAAGCAGTTTTGCTTGTTAATCCTGTGGAGCCAGAGTTCAAAGGAGAGGTGGATGATAAGTACCAATACTCAAGTGAGAACAAAGATATTAAGGTCCATGGTTGGATAAGTTCTGAATCTGAAATTGATCCACCAATGGGTTTTTGGGTAATCATACCCACCAATGAATTTCTTACAGGTGGTCCTGTTAAACAAAACCTTACCTCCCATGTTGGCCCTATCAGCCTTGCAATGTTCCTTAGTGCTCATTATGCTGGAGAGGATATTGTTCTTAAACTCAAACCAAATGAACCATGGAAGAAAGTTTTGGGACCAACATTTTTCTATCTTAATAACAACACTTTGTTGGATTCTGAAGACCCATTGGAGCTATGGGAGGATGCTAAACTTCAGATGACTGAGGAAGTTCAAAATTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAGAAGTCTAGCCAAAGAGGCAGTGTCTCTGGCACATTACTGGTTCGAGACAGGTGCCTAAGTAATGATGACATATTTGCACAAGGAGCATATATAGGACTGGCACCACCAGGAGATGCTGGGTCCTGGCAAAGAGAAAGCAAGGGTTATCAATTCTGGACTCGAGCAAACGATGAAGGAAACTTCGCAATCGATAATATACGCAGCGGGGATTACAATCTCTATGCCTGGGTTCCAGGTTTCATTGGAGAGTTTTGGAACAATGTTGTAATCACCATAACCCCAGGTTGTGAAATAAATGTTGGTGACATAGTTTTTGAGCCCCCAAGAGATGGTCCAACATTATGGGAGATAGGCATTCCTGATCGCTCTGCTACTGAGTTTTATGTTCCAGATCCTAATCCGAAGTATATAAACAAGCTTTATGTCAACCATCCAGACAAGAAGAATGATGATGGTAGCTACAAAGGAACCACATGGCAAATTAAGTTCAACCTTGATGAAGTGAATACAAGTGTAATCTATAAATTGAGGTTGGCTCTTGCAAGTGCCAATGTCTCTGAATTACAGGTTAGAGTAAATGATCAAAAACAAGATCCTCCACTATTTACTACAGGGGTGATTGGAAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTACTGGTTATTCAGCATTGATGTACCAGGTCTTCTACTAAAGGAAATGGATAATACTATATATCTAACACAAACTATAGCTACTGAACCTTTGGCCCTATTCCATGGAGTAATGTATGATTATATTCGTTTAGAAGCCCCCAAATCTTAA	1851	0.396	MQLRFLISFNMSSRPVQLWIKGNHVVMDNGILQVYLSNPGGFVTRIQYNGIDNILEDLNEDFNRGYWDIVWSESGSTGTTGTFERIVGTNFKVIVENEEQVEISFTRMWDPSLKGKLSAVNIDKRYVMLRNSSGFYSYGIFEHLKEWPAFNIPQIRIVFKLRKDKFHYMAVADDRQRFMPLPDDRLPRRGEELVPPEAVLLVNPVEPEFKGEVDDKYQYSSENKDIKVHGWISSESEIDPPMGFWVIIPTNEFLTGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLKPNEPWKKVLGPTFFYLNNNTLLDSEDPLELWEDAKLQMTEEVQNWPYDFPASEDFQKSSQRGSVSGTLLVRDRCLSNDDIFAQGAYIGLAPPGDAGSWQRESKGYQFWTRANDEGNFAIDNIRSGDYNLYAWVPGFIGEFWNNVVITITPGCEINVGDIVFEPPRDGPTLWEIGIPDRSATEFYVPDPNPKYINKLYVNHPDKKNDDGSYKGTTWQIKFNLDEVNTSVIYKLRLALASANVSELQVRVNDQKQDPPLFTTGVIGKDNAIARHGIHGLYWLFSIDVPGLLLKEMDNTIYLTQTIATEPLALFHGVMYDYIRLEAPKS*	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan9g1152	616	Pfam	Polysaccharide lyase family 4, domain II	373	445	IPR029413	-
	Lan9g1152	616	CDD	RGL4_C	461	612	-	-
	Lan9g1152	616	PANTHER	LG27/30-LIKE GENE	493	616	-	-
	Lan9g1152	616	PANTHER	LG27/30-LIKE GENE	13	493	-	-
	Lan9g1152	616	Coils	Coil	524	544	-	-
	Lan9g1152	616	Gene3D	-	347	446	-	-
	Lan9g1152	616	PANTHER	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	13	493	-	-
	Lan9g1152	616	PANTHER	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	493	616	-	-
	Lan9g1152	616	Pfam	Polysaccharide lyase family 4, domain III	459	611	IPR029411	-
	Lan9g1152	616	SUPERFAMILY	Starch-binding domain-like	348	448	IPR013784	GO:0030246
	Lan9g1152	616	SUPERFAMILY	Galactose-binding domain-like	456	612	IPR008979	-
	Lan9g1152	616	Gene3D	-	457	612	-	-
	Lan9g1152	616	CDD	RGL4_N	22	309	-	-
	Lan9g1152	616	Gene3D	-	18	287	IPR014718	GO:0030246
	Lan9g1152	616	SUPERFAMILY	Galactose mutarotase-like	22	315	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Lan9g1152	616	Pfam	Rhamnogalacturonate lyase family	13	213	IPR010325	-
	Lan9g1152	616	CDD	RGL4_M	350	449	IPR029413	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan9g1152	Lan-Chr9	18905250	18910284	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan9g1152	11	614	Polysaccharide Lyase	AT1G09890	59.876	0.0	769

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan9g1152	K18195		-	gmx:100815677	1042.34