Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1148 ATGCTTCCAAAGAACTTGCTCTTCAGTTTCACCCTCATTCTCACGCACACATTCAATTCCCCTTTCAATTCAAATCAAATTCAAACTCTAGCTAGGGTTAGCTTTTCGAATTCCACTCTATTTCTCCTTGTAAATGCTTCGGAACCTCTGAATTCCATCATTGAACCAACAATGTACGGTCACGCCCCACCAACGAACATGGACAACCAAATCGGTGCTGACGAAAACGTCGACGGATCTGGCGAGCACTCTATGGATCACATTCAGTATGAAACGCATGCCCTTGATGATGGTAACGGTGCAATTGGTGGGGGCGTTGAAGATATTGCTGCTGCTGATGTATATGTCTCCGGTGACGGTGGTGGTGGGGACCACGACTTTGCTGTTCAACCCTGCGATGGGTCTAACCAGCTAACACTGTCGTTTCGTGGCCAAGTTTATGTTTTTGATTCTGTTACACCTGATAAGGTTCAAGCGGTATTCTTACTGTTGGGTGGTTGTGAATTGCCTTGCCCGGATACAGCACCTCAACATGATCAACGGCAAGCTCCATTGGAATATCCTGCAAGGTGTAGTCAACCACAGAGGGCAGCGTCATTAAGCAGGTTTCGGAGGAAGAAGAGAGAGCGATGCTTTGAGAAGAAAATTAGATATGAAGTACGCCAAGAAGTTGCTTGCAGGATGGACCGTAAAAAGGGCCAGTTTACTTCGTCTAAGAAACAAGATGGAGCTAGTAGTCTGGGTGCTGGCCAGGAGTCAGGGCAGGATGATAGTCCATCAGAAACTGCGTGCACACATTGTGGCATTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCAAATGGACCAAGGTCACTATGCAACGCTTGCGGACTTTTTTGGGCAAATAGGGGTACTTTGAGAGACCTGTCTAAGAGAAACCAGGAACTCTCTCTTGTACCAGCTCAGCAGGTTGAAGGTAATAATAACTCAGACTGTGGGACTGCCATCCATGCACATAACAATCTTGTTACTTTCTCCGGTAACGATAACCCAGATTTGGTACCTGGTCGCTGA 1059 0.4703 MLPKNLLFSFTLILTHTFNSPFNSNQIQTLARVSFSNSTLFLLVNASEPLNSIIEPTMYGHAPPTNMDNQIGADENVDGSGEHSMDHIQYETHALDDGNGAIGGGVEDIAAADVYVSGDGGGGDHDFAVQPCDGSNQLTLSFRGQVYVFDSVTPDKVQAVFLLLGGCELPCPDTAPQHDQRQAPLEYPARCSQPQRAASLSRFRRKKRERCFEKKIRYEVRQEVACRMDRKKGQFTSSKKQDGASSLGAGQESGQDDSPSETACTHCGISSKSTPMMRRGPNGPRSLCNACGLFWANRGTLRDLSKRNQELSLVPAQQVEGNNNSDCGTAIHAHNNLVTFSGNDNPDLVPGR* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1148 352 Pfam tify domain 134 165 IPR010399 -
Lan9g1148 352 MobiDBLite consensus disorder prediction 238 277 - -
Lan9g1148 352 MobiDBLite consensus disorder prediction 231 278 - -
Lan9g1148 352 SMART tify_2 131 166 IPR010399 -
Lan9g1148 352 Pfam CCT motif 196 238 IPR010402 GO:0005515
Lan9g1148 352 ProSiteProfiles CCT domain profile. 196 238 IPR010402 GO:0005515
Lan9g1148 352 PANTHER GATA TRANSCRIPTION FACTOR 28 74 331 IPR045280 GO:0006355
Lan9g1148 352 CDD ZnF_GATA 263 309 IPR000679 GO:0006355|GO:0043565
Lan9g1148 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 260 315 - -
Lan9g1148 352 ProSiteProfiles GATA-type zinc finger domain profile. 258 317 IPR000679 GO:0006355|GO:0043565
Lan9g1148 352 Gene3D - 255 313 IPR013088 GO:0006355|GO:0008270
Lan9g1148 352 SMART GATA_3 258 311 IPR000679 GO:0006355|GO:0043565
Lan9g1148 352 Pfam GATA zinc finger 264 300 IPR000679 GO:0006355|GO:0043565
Lan9g1148 352 ProSiteProfiles Tify domain profile. 131 166 IPR010399 -
Lan9g1148 352 PANTHER GATA TRANSCRIPTION FACTOR 25 74 331 - -
Lan9g1148 352 ProSitePatterns GATA-type zinc finger domain. 264 291 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1148 Lan-Chr9 18836959 18842762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1148 68 349 Tify Gene Family AT4G24470 47.213 1.35e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan9g1148 CCT 1.1e-12 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1148 - - lang:109356321 705.286