Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1139 ATGGCGAGGCAGAAGAGAAGGATAAAGAAAATTGACAATGTAACTGCGAGACAAGTAACATTTTGTAAGAGAAGGAGAGGGATTTTCAAGAAAGCTCAAGAGCTTTCTGTGTTGTGTGATGCTAAGGTTGCTCTCCTTGTTTTCTCAGCTACAGGGAAGTTTTATGAATATGCTAGCTCTAGTATGAAGGACATACTTACAAGGTATAATCAGCATTTTCATGACATCAACCAAAGACAAGGACCTCTAGAAATGCAGCTAGAGGATAACACTTACAATGAATTAAGGAAGAAAGTTGCAGAAAAAACCCAACAACTAAGGCGTATGAAAGGTGAAGATTTTGAAGGGCTAAACCTAGATGATGTGCAGCATATGGAGGAAAGACTTGAAGAGGGACTCAAACGTGTGATTATGGCAAAGGAAAAGCTGATTGCTGATGAGATTGTTGCACTTCAGAAAAAGGGAAACAAGTTAGAAGACGAGAGAAAGCAGTTAAAGCAAAAGATGATTATGATTTCCAAAGGAAAAACTCCTTCAATGGTGGACTCGAATATTGCCATTCAGGAAACTTTTTCATCTGATTCCATGAATAATGTTTGCAGCTGCAACAGTGGCCCTTCTATTGAGGATGATTCATCTGACACATCTCTTAAGTTAGGGTTGCCCTTCCCAGATTGA 678 0.3923 MARQKRRIKKIDNVTARQVTFCKRRRGIFKKAQELSVLCDAKVALLVFSATGKFYEYASSSMKDILTRYNQHFHDINQRQGPLEMQLEDNTYNELRKKVAEKTQQLRRMKGEDFEGLNLDDVQHMEERLEEGLKRVIMAKEKLIADEIVALQKKGNKLEDERKQLKQKMIMISKGKTPSMVDSNIAIQETFSSDSMNNVCSCNSGPSIEDDSSDTSLKLGLPFPD* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1139 225 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan9g1139 225 Pfam K-box region 89 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan9g1139 225 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Lan9g1139 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan9g1139 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan9g1139 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan9g1139 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 219 - -
Lan9g1139 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan9g1139 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan9g1139 225 MobiDBLite consensus disorder prediction 205 225 - -
Lan9g1139 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan9g1139 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan9g1139 225 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lan9g1139 225 Coils Coil 148 168 - -
Lan9g1139 225 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 219 - -
Lan9g1139 225 Coils Coil 85 112 - -
Lan9g1139 225 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1139 Lan-Chr9 18775066 18780311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1139 1 222 MADS-box Gene Family AT4G24540 51.111 6.03e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan9g1139 K-box 8.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1139 - - tcc:18591803 268.085