Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1124 ATGATGCGCTATCCTGCACCTTCTCTTATCACTTTTCTCACATTCACATCACTACTTCGATATCCCCATACCTTCCTCTCTGTGCTTCTTCTTCATTTCCTTCTCATATCTCCGGCAACCGCACAGAACCAAGATGCTATGTCTCCGCCGCAAGACCCGTTCGCCAAGCTCCAGTTCGACAAAACCATGCTCATCTTCATCGTCATCATCATCATCTTGCTCTTCATCTTAGCCTTCGTTTCCATCTACACTCGCCAATGCGCAGAGCCAAGAGTCATGGCGAGGTTCAACTTCTCCATCCCCATCATCGGCGTCGGCGACACCAGTTTCCGGACACCGTGCGGCCTTAGCCAAGAGATCATCGACACATTCCCAACCTTCGTATACTCCACCGTGAAAAGCCTTAAAATCGGGATTGCAACGCTAGAATGCGCCGTGTGCATCAACGAGTTTCTCGACGATGAAACGCTGCGTTTAATCCCGAAATGTAGCCACGTGTTCCACCCTGATTGCATTGATGCATGGCTTAGAACTCATTCCACATGTCCCGTTTGCCGCGCAAACTTAATTCAAAAACCTGGAGACATTTCTTCCCTCGCAATTCAGATTCCAGATTCTCGCAATTCTGATTCAGAGGAACCGAATGAAATTAACGACGGTGTTATGAATTCAATAGAAGAATCCAATTTAGATAAGCAGAACTTGTTCCCGCGTTCTCATTCAACGGGTCCTTGGCATCGAGATAGGTACACGCTGAGGTTGCCGGAGGAGGTGTTGAACCGGTTGGTGAATTCGGGAAGGAGGCTGAGCCGAACGAAGAGTTGCGGAGTGATGTGGCAGAGAGAGATCAGTGGACGGAGGAGCTACCGGAATCAAGAGCGGTTCGGAGGGGAAAACCGGTTGGACCGGTGGGGGTTCACGTGGACCCCATCGTTCATGAGTAGGAATTGGTCAACGAGGGAGAACGTGAAAGTGGAAGTGGACGTTGAAGGACATTCTTATGATCGTTTATTTTCTTCAAAGGAGTGA 1029 0.4917 MMRYPAPSLITFLTFTSLLRYPHTFLSVLLLHFLLISPATAQNQDAMSPPQDPFAKLQFDKTMLIFIVIIIILLFILAFVSIYTRQCAEPRVMARFNFSIPIIGVGDTSFRTPCGLSQEIIDTFPTFVYSTVKSLKIGIATLECAVCINEFLDDETLRLIPKCSHVFHPDCIDAWLRTHSTCPVCRANLIQKPGDISSLAIQIPDSRNSDSEEPNEINDGVMNSIEESNLDKQNLFPRSHSTGPWHRDRYTLRLPEEVLNRLVNSGRRLSRTKSCGVMWQREISGRRSYRNQERFGGENRLDRWGFTWTPSFMSRNWSTRENVKVEVDVEGHSYDRLFSSKE* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1124 342 PANTHER RING FINGER DOMAIN-CONTAINING 28 282 - -
Lan9g1124 342 PANTHER RING-H2 FINGER PROTEIN ATL11 28 282 - -
Lan9g1124 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 191 IPR013083 -
Lan9g1124 342 SMART ring_2 144 185 IPR001841 -
Lan9g1124 342 Pfam Ring finger domain 143 186 IPR001841 -
Lan9g1124 342 SUPERFAMILY RING/U-box 138 194 - -
Lan9g1124 342 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Lan9g1124 342 CDD RING-H2_PA-TM-RING 143 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1124 Lan-Chr9 18615406 18616685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1124 24 331 Rapid Response to Elicitors AT3G05200 37.026 2.76e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1124 K10664 - gmx:100807828 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g1124 9 18615406 18616685 Lan15g0586 15 13261006 13263049 PCT
Lan9g1124 9 18615406 18616685 Lan14g0672 14 13665223 13666237 PCT
Lan15g0586 15 13261006 13263049 Lan9g1124 9 18615406 18616685 PCT
Lan14g0672 14 13665223 13666237 Lan9g1124 9 18615406 18616685 PCT