Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1123 ATGGTGAGTAATCATAGAAAGCTCTTTCCTTCAGGAACTAGTACAAACCAAACACAAGATTGTTATGGTTTGTGTGACCCAGCATGCCCTTATAATTGTTACACTTACCCAGAATACTCTTTCCCTCAACCACCACCACCACCATTTATTGATCACTCAGACCAAGTTAACCATATCCCCTCTTACTTGATCAGCCTTGTTTCTTTATTCACAGTCATTTTTGTTGTTGCTGTTTTCTATGTGATCAAATTAAAGTGTTATAATGACTTGTGTGGCTGGAGAAGCAATAGATCACTTCCTTCTCAATCAGAAAACAATGGAGAGTTTCTAAATGAGAACCAAGTTGATCATCCTGTGTGGCTCATTACCACAGTTGGTTTACAACAGTCAATCATAAATTCCATTACAGTTTGTAAGTACAAAAAGGATGAAGGGTTGATCGAAGGAACCGAGTGTTCCGTATGCTTGAATGAGTTCAGGGAAGGTGAAACCTTAAGACTATTACCAAAGTGTAATCATGCTTTTCATATTCTTTGCATTGATACATGGTTAAGGTCTCATACCAATTGTCCTCTTTGTCGAGCTGGTATTGTCTCTAATAACAATGTCAGTGTCATCCCTGAAGTAGCAGTTTCAAATTTGGCATCAATGGATCAAGAAAATACCAACTTGGGAAGAAATCAAGCGACCCAGATGGAGAATTCACAGAATGAAGGTATTGGTGGGGTAAACAACAATATTGTTAATATCAATAACAACCAGGCCTTGGAAAACAGATATGGAACAGAAGAAGCAAGTGAAGAAATACAGTTCAATGATGAATCTAATTCCAAGGGTCATGTTTCTCAGGTATTCAATGATGCAAATGAGAATCATAAGGTTCTAAATGATGAGATGCAAGCAAATTCTTATTCAATAGATCATGAAAGCCACCCTGTTGATAAAATACAAGATGAGATAGAGTTGCAAATGGTTAATGTTTTGAAGGAAGAAAGTGAGAACTCAAAAACATGCAAGATAATGCGTCGTTCCTCAATTGAAGAGTGTTTGCATATAAGCCCGGTTTCTATGAAAAGGTCATTCTCCTGCAGTGGAAGGAATCTATCTACAAGAGGTTACATGAGTCTAAACAAAACTCTTCCCTACTAG 1149 0.3742 MVSNHRKLFPSGTSTNQTQDCYGLCDPACPYNCYTYPEYSFPQPPPPPFIDHSDQVNHIPSYLISLVSLFTVIFVVAVFYVIKLKCYNDLCGWRSNRSLPSQSENNGEFLNENQVDHPVWLITTVGLQQSIINSITVCKYKKDEGLIEGTECSVCLNEFREGETLRLLPKCNHAFHILCIDTWLRSHTNCPLCRAGIVSNNNVSVIPEVAVSNLASMDQENTNLGRNQATQMENSQNEGIGGVNNNIVNINNNQALENRYGTEEASEEIQFNDESNSKGHVSQVFNDANENHKVLNDEMQANSYSIDHESHPVDKIQDEIELQMVNVLKEESENSKTCKIMRRSSIEECLHISPVSMKRSFSCSGRNLSTRGYMSLNKTLPY* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1123 382 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Lan9g1123 382 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 373 IPR044675 -
Lan9g1123 382 SMART ring_2 152 193 IPR001841 -
Lan9g1123 382 SUPERFAMILY RING/U-box 142 200 - -
Lan9g1123 382 Pfam Ring finger domain 151 194 IPR001841 -
Lan9g1123 382 CDD RING-H2_PA-TM-RING 151 194 - -
Lan9g1123 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 203 IPR013083 -
Lan9g1123 382 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1123 Lan-Chr9 18612265 18613813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1123 5 198 C3H Transcription Factor Family AT1G72220 48.649 3.71e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1123 - - aprc:113847030 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0455 11 3368597 3370392 Lan9g1123 9 18612265 18613813 LSH