Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1120 ATGAATCAAAATCAGCTTCAGCCTCTACCTCTGCTAAGCAGCTTCCTTGGTAGTAGTTCATCTCCACAAGAAGAAGTTTTACTACAGAACCAAAAACCTAGAACATGCTATAGTGAAGCTCATGAGGATGTCACAGTGGCACTACACATAGGGCTACCTGATAATTCAAGTAGTGTCTCCAACACCAATAATAATGAAGTTGTGAATTCATCAGGCCAAGTTCCTAACAATTACTGGATACCAACTCAAGAGCAGATCCTCATAGGGTTCAGCCATTTCTCTTGTCCTATCTGCCTCAAAGCCTTCAACCGCTACAACAACCTTCAGATGCACATGTGGGGACATGGGTCACAATATCGAAGAGGACCAGACTCACTGAAAAGAACTCATCCACGACCTTTATTAGACATTCCATGCTATTGTTGCTCAAGCGGATGCAAGAACAGCATAGAGCACCCAAAGGCCAAGCCTCTGAAAGATTTTCGAACACTACAAACACACTACAAAAGGAAGCATGGGATAAAGCCCTTCACGTGTCGCAAGTGTGGGAAATCTTTGGCTGTCAAAGGTGACTGGAGAACCCATGAAAAAAACTGCGGCAAACGCTGGCTTTGTATTTGTGGTTCTGATTTCAAACACAAGAGGTCACTTAAGGATCATATCAAAGCTTTTGGCTTTGGTCATAGCCCTTTTTCTTCTTCTGATGCCATGTAA 714 0.4314 MNQNQLQPLPLLSSFLGSSSSPQEEVLLQNQKPRTCYSEAHEDVTVALHIGLPDNSSSVSNTNNNEVVNSSGQVPNNYWIPTQEQILIGFSHFSCPICLKAFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSSGCKNSIEHPKAKPLKDFRTLQTHYKRKHGIKPFTCRKCGKSLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSDAM* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1120 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Lan9g1120 237 Gene3D Classic Zinc Finger 92 115 - -
Lan9g1120 237 SUPERFAMILY beta-beta-alpha zinc fingers 88 115 IPR036236 -
Lan9g1120 237 SMART c2h2final6 177 197 IPR013087 -
Lan9g1120 237 SMART c2h2final6 93 115 IPR013087 -
Lan9g1120 237 SMART c2h2final6 140 172 IPR013087 -
Lan9g1120 237 SUPERFAMILY beta-beta-alpha zinc fingers 162 197 IPR036236 -
Lan9g1120 237 Pfam Zinc finger, C2H2 type 93 112 IPR013087 -
Lan9g1120 237 PANTHER ZINC FINGER PROTEIN WIP2 3 233 IPR043584 GO:0003700|GO:0010468
Lan9g1120 237 PANTHER PROTEIN TRANSPARENT TESTA 1-LIKE 3 233 - -
Lan9g1120 237 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lan9g1120 237 Gene3D Classic Zinc Finger 136 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1120 Lan-Chr9 18579357 18580594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1120 1 234 C2H2 Transcription Factor Family AT1G34790 57.200 9.01e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan9g1120 zf-C2H2 0.0039 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1120 - - gmx:547675 397.897