Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1114 ATGAAAACGTTGATGGGTAAAGGAGATGCTAAAGTAAACACCTTCATTGATTCAATGAGAGCATCTTCTCCTACTAGAGCAGAAAACCAAGATCAAGTTCCTACTTGGATTTTTTATAATCCCTCGGCGTTGAAGATGTTTGAGGAAATAGTATATAACTCGAGAGGGAAACAGATTGTGACTTTTTTGGACTATGATGGAACTCTCTCCCCAATTGTTTCAGATCCTGATAAAGCATTCATGACTGAAAAGATGAGAGCTACCCTCAAAGACATAGCAATGCATTTTCCCACCGCCATCGTGAGTGGAAGGTCCGTGGACAAGGTATATAACTTTGTGCAATTGACAGAACTGTACTATGCAGGAAGCCATGGCATGGACATAAGGGGACCAACAAAAAGCAGAAGTCATAAGAAAATCAATGAAGGAGTGCTGTTCCAAGCTGCAAGTCAATTCCTACCCATGATTAATGAGGTTTACAAGATCTTGGTGGAAAAAACAAAGTCTGTGCAGGGAGCTATGGTAGAAAGTAACAAGTTTTGCTTGTCAGTGCACTTTCGCTGTGTTGATGAAAAGAATTGGGCAGCATTGGCAGAGAAAGTTAGATTGGTGCTGAATGAATACCCAAAGCTTAGGATTACCCAAGGGAGAAAAGTACTAGAGATTCGACCATCCATAAAATGGGACAAAGGCAAAGCTCTTGATTTTGTGTTAGAGTCATTAGGATACAATAATTCTAATAATGTGTTTCCAATCTATATCGGTGATGATCGAACTGACGAAGATGCTTTTAAGGTTTTAAGTAGTAGGAGCCAAGGGGTTGGGATTCTTGTATCTCAAATTCCAAAAGAAACAAACGCTTCCTACACTTTACAAGATCCATCAGAGGTTGAACAATTTTTGCACCGCTTGGTAGAGTGGAGAAGAAAGAGTTCTCACTCCCACAAGTTATACGTTGTAGACAACTTCAAGAAATTAACACTACCCTAG 990 0.399 MKTLMGKGDAKVNTFIDSMRASSPTRAENQDQVPTWIFYNPSALKMFEEIVYNSRGKQIVTFLDYDGTLSPIVSDPDKAFMTEKMRATLKDIAMHFPTAIVSGRSVDKVYNFVQLTELYYAGSHGMDIRGPTKSRSHKKINEGVLFQAASQFLPMINEVYKILVEKTKSVQGAMVESNKFCLSVHFRCVDEKNWAALAEKVRLVLNEYPKLRITQGRKVLEIRPSIKWDKGKALDFVLESLGYNNSNNVFPIYIGDDRTDEDAFKVLSSRSQGVGILVSQIPKETNASYTLQDPSEVEQFLHRLVEWRRKSSHSHKLYVVDNFKKLTLP* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1114 329 Pfam Trehalose-phosphatase 62 295 IPR003337 GO:0003824|GO:0005992
Lan9g1114 329 CDD HAD_TPP 62 297 - -
Lan9g1114 329 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 62 267 IPR006379 -
Lan9g1114 329 SUPERFAMILY HAD-like 62 307 IPR036412 -
Lan9g1114 329 Gene3D - 161 319 IPR023214 -
Lan9g1114 329 Gene3D - 59 160 IPR023214 -
Lan9g1114 329 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 8 317 - -
Lan9g1114 329 TIGRFAM T6PP: trehalose-phosphatase 57 305 IPR003337 GO:0003824|GO:0005992
Lan9g1114 329 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 8 317 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1114 Lan-Chr9 18500014 18503282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1114 40 301 Trehalose Biosynthesis Gene Families AT1G23870 26.642 6.14e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1114 K01087 - gmx:100792915 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0472 11 3585278 3587904 Lan9g1114 9 18500014 18503282 LSH
Lan9g1114 9 18500014 18503282 Lan15g0846 15 17663489 17666130 PCT
Lan9g1114 9 18500014 18503282 Lan14g0647 14 13412721 13415199 PCT
Lan15g0846 15 17663489 17666130 Lan9g1114 9 18500014 18503282 PCT
Lan14g0647 14 13412721 13415199 Lan9g1114 9 18500014 18503282 PCT