Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1112 ATGGCAGCAAAAATGAATTTCTTCAACAACAGCACACAACTTGATTCAGATCCTTTCAGAGTTGAATTAATGGAAGTTCTTTCACCTTTTGTGAAAACTCCTTCCACAACAACAACTCCTTCTCTAATCTCACCCCCTTCTTCAATTTCATACCTACCTTCTTTCCCTACACAGCCCAATTTCTACACAGAAGGTTGCCCTACAATGATGACCCATTTATTTGACACTGGGTTATCAAACAGCTACAACTTCATAGGCTTTGAGCAACCAAGTTCTGTTTTTGGTCTAAACAACCTAACCCCATATCAGTTTAACCAAATCCAAGCCCATAACAGCAACACACTCAGCTTCCTAAGTCCAAAACCTGTCCCAATGAAGCAAGTGGGTTTGCCACCAAAGCCTACAAAGCTGTATAGAGGAGTAAGGCAAAGACATTGGGGGAAATGGGTAGCTGAGATAAGACTCCCAAAGAACAGAACAAGGCTTTGGCTTGGTACTTTTGACACTGCTGAAGAAGCTGCTTTGGCTTATGACAAAGCAGCATACAAGCTTAGAGGTGACTTTGCAAGGCTTAACTTTCCAAACCTGAAGCATCAAGGTTCTTGTGTTGGAGGGGCTTTTGGAGAGTATAAGCCTTTGCATTCTTCTGTTTATGCAAAACTTGATGCTATCTGTGATGATTTGCAGAAACAAGTGAAGCCAGAGAAGAAACCTGTTAAAAGATCAAAAGTGAGTTCAAAGGAAGAGGTTCAGCCACAGTTGCAGAACAACAACAATTGCAAGGAGGAAACTTTATTGTCTACTGTTGTTACAGATTGTGAAGGATCTGATGGGTCTTCTCCTTTGTCAGATCTTACTTTTGATGATTTCACTGAGCCACAGTGGGAAACTCCTTCAGAAAATTTTAATCTGATGAAGTTCCCTTCTTATGAAATAGACTGGGATTCACTGTGA 954 0.4088 MAAKMNFFNNSTQLDSDPFRVELMEVLSPFVKTPSTTTTPSLISPPSSISYLPSFPTQPNFYTEGCPTMMTHLFDTGLSNSYNFIGFEQPSSVFGLNNLTPYQFNQIQAHNSNTLSFLSPKPVPMKQVGLPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSCVGGAFGEYKPLHSSVYAKLDAICDDLQKQVKPEKKPVKRSKVSSKEEVQPQLQNNNNCKEETLLSTVVTDCEGSDGSSPLSDLTFDDFTEPQWETPSENFNLMKFPSYEIDWDSL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1112 317 Gene3D AP2/ERF domain 137 195 IPR036955 GO:0003700|GO:0006355
Lan9g1112 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 316 - -
Lan9g1112 317 SMART rav1_2 137 200 IPR001471 GO:0003700|GO:0006355
Lan9g1112 317 ProSiteProfiles AP2/ERF domain profile. 137 194 IPR001471 GO:0003700|GO:0006355
Lan9g1112 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 316 - -
Lan9g1112 317 SUPERFAMILY DNA-binding domain 137 194 IPR016177 GO:0003677
Lan9g1112 317 MobiDBLite consensus disorder prediction 235 258 - -
Lan9g1112 317 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Lan9g1112 317 CDD AP2 136 196 IPR001471 GO:0003700|GO:0006355
Lan9g1112 317 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Lan9g1112 317 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1112 Lan-Chr9 18477692 18479258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1112 1 317 AP2-EREBP Transcription Factor Family AT1G78080 49.422 2.81e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan9g1112 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1112 K09286 - gmx:732559 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0918 2 19826527 19828188 Lan9g1112 9 18477692 18479258 LSH
Lan11g0474 11 3611704 3613568 Lan9g1112 9 18477692 18479258 LSH
Lan9g1112 9 18477692 18479258 Lan15g0843 15 17643013 17653566 PCT
Lan9g1112 9 18477692 18479258 Lan14g0645 14 13384605 13386440 PCT
Lan15g0843 15 17643013 17653566 Lan9g1112 9 18477692 18479258 PCT
Lan14g0645 14 13384605 13386440 Lan9g1112 9 18477692 18479258 PCT