Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1062 ATGTGCAAGATGCTGATAAGCATAGAGAGTGGCTATGAATTAATGATGGTGCAAAAGGAGGTTGCTAGTATATGTGATGCAATGCTTTCCCTTTCCTTTTACTTGAGGTTAAATGTCTCAAAGACCCTGAACAACATTGCTAGTGAGGAAACCATCCCTACAAATGAAGAAACACTGACTGAGTTGGAAGAGAATTCAAATTGTAGTCTTGATGACGGAATTCAAGTGTCTATAGGTGGGACAAACTCACCCGACTGCAAAATTTGCGGAGATGAGGTGGATGGTGACAAAGTAAAAATATGCGGTCACCCTTTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCAAGTAAGTTGATGAAGTTGTATGCTCAATGTTGGTACTGCCCTTTTTGTTTATGCCAAGTTTGCCTCACTGATCAAGATGATGATGAGATTGTCCTCTGTGATAGCTGTGATCATGCATACTTCATCTATTGCATGAAACCTCTGCGAACTTCTGTTCCAGAAGGGAAATGGTTCTGCAGAAAATGCAATGCAGGGATCCAAGCAATACGGCGGGCAAAAAAGGCATATGAGAGTAAAAAGTGGAGAACTGATGTAAATGTTTCAAAGCCAAACAACGAGAATGTTAAGAAATGGAACAATAAACGGGGACGGGAGTCAGACAAAGCTCGAGGAATGGACATGCTTTTAACTGCAGCCAGTACTCTGAATTTTGAAGAGAACTTAACTACAACCCAGATTGAGTCCCAAAGAACATGA 768 0.4102 MCKMLISIESGYELMMVQKEVASICDAMLSLSFYLRLNVSKTLNNIASEETIPTNEETLTELEENSNCSLDDGIQVSIGGTNSPDCKICGDEVDGDKVKICGHPFCPSKYYHVRCLSSKLMKLYAQCWYCPFCLCQVCLTDQDDDEIVLCDSCDHAYFIYCMKPLRTSVPEGKWFCRKCNAGIQAIRRAKKAYESKKWRTDVNVSKPNNENVKKWNNKRGRESDKARGMDMLLTAASTLNFEENLTTTQIESQRT* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1062 255 ProSiteProfiles Zinc finger PHD-type profile. 132 182 IPR019787 -
Lan9g1062 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 210 IPR013083 -
Lan9g1062 255 SMART PHD_3 135 180 IPR001965 -
Lan9g1062 255 SMART PHD_3 85 134 IPR001965 -
Lan9g1062 255 Pfam PHD-finger 135 180 IPR019787 -
Lan9g1062 255 SUPERFAMILY FYVE/PHD zinc finger 80 134 IPR011011 -
Lan9g1062 255 ProSiteProfiles Zinc finger RING-type profile. 86 133 IPR001841 -
Lan9g1062 255 SUPERFAMILY FYVE/PHD zinc finger 134 188 IPR011011 -
Lan9g1062 255 PANTHER HISTONE ACETYLTRANSFERASE 49 243 - -
Lan9g1062 255 PANTHER D4, ISOFORM A 49 243 - -
Lan9g1062 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 133 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1062 Lan-Chr9 17842813 17843845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1062 134 197 C2H2 Transcription Factor Family AT3G01460 43.750 8.59e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan9g1062 PHD 9.1e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1062 - - lang:109356312 515.768