Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1053 ATGCAGAATTACAGGCTCAAGCAGCAGCAACAACAACAAGCTCTGATGCAACAAGCACTTCTTCAACAACAATCTCTCTACCACCCTGCTCTCCTAGCTCCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGACCCAAGTACTTGCCGCAGTGTGTTTGTTGGTAATATTCATACTCAGGTAACCGAGCCACTTTTGCAAGAAGTTTTTGCAGGTACCGGCCTGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCACTACTTTGATCGCAGATCTGCAGCTCTTGCCATATTATCTCTCAATGGAAGGCATTTATTTGGGCAGCCTATCAAAGTTAACTGGGCTTATGCTAGTGGTCAGAGGGAGGATACATCAGGTCATTTCAACATATTTGTTGGTGATTTAAGTCCCGAGATCACTGATGCTACATTGTTTGCATGTTTTTCTGTTTACCCCAGTTGCTCAGATGCGAGGGTTATGTGGGATCAAAAGACTGGGCGTTCAAGGGGGTTTGGATTTGTTTCATTCCGAAATCAGCAGGATGCTCAGAGTGCCATAAATGATTTGACTGGCAAGTGGCTTGGAAGCAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGCTGGTGGCAATGAAGATAACCCAAACATAGACACCAAAACTGTGGTAGAACTAACAAATGGATCATCTGACGGTAAAGAGACATCAAACAATGATGCTCCTGAGAACAATCCTCAATATACTACTGTCTATGTGGGTAACCTTGCTTCAGAGGTAACACAACTTAATCTCCATAGCCACTTCCATTCTCTTGGAGCTGGAGTGATAGAAGAGGTTCGCGTTCAGCATGATAAAGGATTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATACCCACTCTATCCTATGCGGCAAACCAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCCGGAACTGCTTCAAATCCTCTTCCCCCGCCTGCTGCTGCAACTCTGTCAGGCTTCTCCTCGACGGATCTTTTGGCTTACGAACGACAACTAGCAATGAGCAAGATGGGTGGTGGCCATGCTTTGAATCCTTTGATGCATCCTCTTAAACAGGCAGCAATTGGAGCTAGCCAGATATATGATGGTGGGTTCCAGAATGTTGCTGCTGCACAGCAAATGATGTACTACCAGTAG 1251 0.4556 MQNYRLKQQQQQQALMQQALLQQQSLYHPALLAPPQIEPIPSGNLPPGFDPSTCRSVFVGNIHTQVTEPLLQEVFAGTGLVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEITDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAAGGNEDNPNIDTKTVVELTNGSSDGKETSNNDAPENNPQYTTVYVGNLASEVTQLNLHSHFHSLGAGVIEEVRVQHDKGFGFVRYSTHAEAALAIQMGNTHSILCGKPIKCSWGSKPTPPGTASNPLPPPAAATLSGFSSTDLLAYERQLAMSKMGGGHALNPLMHPLKQAAIGASQIYDGGFQNVAAAQQMMYYQ* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1053 416 SUPERFAMILY RNA-binding domain, RBD 134 223 IPR035979 GO:0003676
Lan9g1053 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Lan9g1053 416 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 10 398 - -
Lan9g1053 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Lan9g1053 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Lan9g1053 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 329 IPR000504 GO:0003723
Lan9g1053 416 CDD RRM1_TIA1_like 57 127 - -
Lan9g1053 416 CDD RRM2_PUB1 141 215 - -
Lan9g1053 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 10 398 - -
Lan9g1053 416 Gene3D - 1 138 IPR012677 -
Lan9g1053 416 Gene3D - 239 340 IPR012677 -
Lan9g1053 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 336 IPR000504 GO:0003723
Lan9g1053 416 CDD RRM3_TIA1_like 261 336 - -
Lan9g1053 416 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Lan9g1053 416 SUPERFAMILY RNA-binding domain, RBD 251 344 IPR035979 GO:0003676
Lan9g1053 416 Gene3D - 139 219 IPR012677 -
Lan9g1053 416 SMART rrm1_1 262 332 IPR000504 GO:0003723
Lan9g1053 416 SMART rrm1_1 56 125 IPR000504 GO:0003723
Lan9g1053 416 SMART rrm1_1 141 214 IPR000504 GO:0003723
Lan9g1053 416 MobiDBLite consensus disorder prediction 239 259 - -
Lan9g1053 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1053 Lan-Chr9 17732041 17738438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1053 56 336 Eukaryotic Initiation Factors Gene Family AT2G23350 30.822 3.11e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1053 K13201 - gmx:100814415 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0558 11 4344849 4349927 Lan9g1053 9 17732041 17738438 LSH