Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1042 ATGTCTTCTTCTTCCAATGACACAATCACCACAAAATGCAACAAAAGGAAGATTGAAATAAAGAAAGTTGAACCAAACAACAAACGCCATGTAACTTTCACCAAACGCAAATTAGGGCTTTTCAACAAAGTCACTGAACTTTCCATTCTATGCCAAGCTGAAACCGCAGTGATCCTTTCCTCTCAACAAGGTAAGCTCTACACTTGCGGCTACCCGGACCCAGATGCAGTCATCCGCCGCTTCCTCACGGACGGGTCTCCGGTGCAACGTGGCCGCGCCGGAAAAAAGCAGCAGCAAGAATTGGTTGAAACCCTAAGGCTTGAATATGAGGATACGCATAAAATGTTGCAAGAAGAGAAGAAGAAACTGGATGAGATTAAGGAGGCACATAATGGTCGTTTGGATTTTCCTGCTTGGTGGAATAAGGATATTGAAAAGATGGGTGTGGAGGATCTTGAGAATTTCATGGCTTCCTTAGAGATATTGAAGCTAAATCTTGTTGCTACAGCTGAAGGAATGAAGCTCAATTCAAGAACACCTATGATCCCAACTCCAATAGATCCAAGAGCAATGTTTTCAAACACAACTGCAACAGATCCAAGAGCAATGTTTTCAAACTTTAATGGTTGTTTCAGTGGAAATCATCAAGCATGGAATTCGATGAATGGTAGCAGCAGCAGTAGTAGAAACCCATTGGTTACTAAATTTGATCTTGGTCATTATTAA 726 0.4174 MSSSSNDTITTKCNKRKIEIKKVEPNNKRHVTFTKRKLGLFNKVTELSILCQAETAVILSSQQGKLYTCGYPDPDAVIRRFLTDGSPVQRGRAGKKQQQELVETLRLEYEDTHKMLQEEKKKLDEIKEAHNGRLDFPAWWNKDIEKMGVEDLENFMASLEILKLNLVATAEGMKLNSRTPMIPTPIDPRAMFSNTTATDPRAMFSNFNGCFSGNHQAWNSMNGSSSSSRNPLVTKFDLGHY* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1042 241 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Lan9g1042 241 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Lan9g1042 241 Gene3D - 26 112 IPR036879 GO:0003677|GO:0046983
Lan9g1042 241 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Lan9g1042 241 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Lan9g1042 241 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Lan9g1042 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 181 - -
Lan9g1042 241 SUPERFAMILY SRF-like 14 82 IPR036879 GO:0003677|GO:0046983
Lan9g1042 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 68 IPR002100 GO:0003677|GO:0046983
Lan9g1042 241 Coils Coil 102 129 - -
Lan9g1042 241 PANTHER MADS BOX PROTEIN 9 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1042 Lan-Chr9 17643950 17644764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1042 15 175 Type I MADS-box Gene Family AT5G60440 33.133 4.13e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan9g1042 SRF-TF 9.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1042 - - lang:109356483 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0582 11 4636567 4637280 Lan9g1042 9 17643950 17644764 LSH
Lan9g1042 9 17643950 17644764 Lan2g0862 2 18925291 18940058 LSH