Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1041 ATGGCAGGAACCTCATCACCCTTTAGCCTATCTTTTCATGATGATCATCTCTTAGTTGATGATTTCTACTTTTCAGCCCTTCATGATGCCGATGAATTATTCCCAATCTCTGATGAGAAATATGCAGAAGAGTTACAACTACAAGAGGCTCTTTATTCCTCAGCCATATCCAGTACTAGGGTTAAGAATGAAGTTATGAAAATGGGTGTGAAAGTTGAAGTTGACCCTCACTTAATGCCCCCTCTAGTCAAGGTGAAAGAGGAAAAGCTTGATATCTTCTTCTGTGCCATTTGCATGGATTCCAAACCTGCTGCAGAAATATTCATGAGCCAAAACTGTTCTCACTCTTTTTGTGGTTATTGTATCACAAAATATGTAGCTGCAAAGATTCAAGAGAATATTTCAATGGTAAAATGCCCAGACCCTAAATGCCGAGGTGTTTTAGATCCTCAAAGTGTTCGCTCAATCATTCCAAAAGATGTTTTTGATCGATGGGAACATGCACTTTGTGATAACTTAGTACTTGGTTCACAGAAATTTTATTGTCCTTTTAAGGATTGTTCTGCTATGTTGATTGATGATGGAATGAAAGCTGTGACTGCTTCTGAGTGCCCACATTGTAATAGAATGTTCTGTGCTCAGTGTAAGGTTTCTTGGCATGCTGGGTTAGATTGTAGTGAGTTTCAGAACTTGAAGGAGGGTGTGCAAAACAAGGAAGATATAATGGTATTGGAACTTGCTAAGAACAATCGTTGGAGAAGATGCTCCAAGTGCAATTTTTTTGTTGAAAAGAATGAAGGATGTGCTCACATTACTTGCAGCTTGGAGCATGCAGAATCTCGTGTTTCTAATCCCGCTGTGATTTATGCAAGACCGGATTATGCTCATTGTGTGGAGGATAATGCCATCAAGATTATCCTGCACTCCATCCATTCTCAAACGGAAACAATGGAAGGGTCAAATAGAAACAAATGTGGAGAACTCGCTATGCATTTCTTGCGTAGGCTGCAAATTGATGCCAAGTTATAA 1029 0.3946 MAGTSSPFSLSFHDDHLLVDDFYFSALHDADELFPISDEKYAEELQLQEALYSSAISSTRVKNEVMKMGVKVEVDPHLMPPLVKVKEEKLDIFFCAICMDSKPAAEIFMSQNCSHSFCGYCITKYVAAKIQENISMVKCPDPKCRGVLDPQSVRSIIPKDVFDRWEHALCDNLVLGSQKFYCPFKDCSAMLIDDGMKAVTASECPHCNRMFCAQCKVSWHAGLDCSEFQNLKEGVQNKEDIMVLELAKNNRWRRCSKCNFFVEKNEGCAHITCSLEHAESRVSNPAVIYARPDYAHCVEDNAIKIILHSIHSQTETMEGSNRNKCGELAMHFLRRLQIDAKL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1041 342 Pfam IBR domain, a half RING-finger domain 177 225 IPR002867 -
Lan9g1041 342 Gene3D - 227 326 - -
Lan9g1041 342 SUPERFAMILY RING/U-box 91 172 - -
Lan9g1041 342 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 18 274 - -
Lan9g1041 342 ProSiteProfiles TRIAD supradomain profile. 91 301 IPR044066 -
Lan9g1041 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 175 IPR013083 -
Lan9g1041 342 Gene3D - 180 226 - -
Lan9g1041 342 SUPERFAMILY RING/U-box 170 230 - -
Lan9g1041 342 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 274 IPR031127 GO:0004842|GO:0016567
Lan9g1041 342 SUPERFAMILY RING/U-box 239 274 - -
Lan9g1041 342 ProSiteProfiles Zinc finger RING-type profile. 95 143 IPR001841 -
Lan9g1041 342 ProSitePatterns Zinc finger RING-type signature. 113 122 IPR017907 -
Lan9g1041 342 SMART ibrneu5 163 225 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1041 Lan-Chr9 17638580 17641018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1041 95 273 C3H Transcription Factor Family AT2G19610 26.455 2.19e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1041 K11975 - gmx:100816161 367.466