Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1039 ATGTTTCAGTTTCATCCTCAAGCATCTACTAAACAGACTTGTACTCTGCTTGCTGTCACTTGTGGCACAAGTTTTGAGCAGCAGAAGCCATCTCAGAATCACCACAATTACCCTTTCCCTGAGTTAGTTTCTGTGGGACGTCTCGAGGTTCAAACTTTGAGCAATCCAGAAAAGGAACAGTTTTGTAAAATTCTTGAGTCGTACCAACCAAATATTGTTTACTTACAAGGAGAACAGCTAGCGAATGGTGAAGTTGGTTCGCTGGTTTGGCAAGGTGTGGAATTGTCCACCCCTGAAGCTATAACAGAGCTCTTCGGTCCCACATTGCCGACTGCTGTTTATTTAGAAATCCCAAATGGAAAAAGTTTTGCAGAGGCTCTTCATTTTAAGGGAATCCCATATGTGATATATTGGAGGAATATTTTTTCTTGTTATGCTGCCTGCCATTTTCGCCAAGCATTTCTTTCAGTGGTGCAGAGTTCATCTACACATACATGGGATGCTTTCCACCTAGCTCTTGCCTCTTTTGAGCTTTACTGCAGTCAAAACAATCAAGTACTCCCTGGTGACAGCCATGATACTAATTGCGAGATGGGGCCACACCTTCTTGGCAATCATCTCCAAATTAATGTTGACCCTCCTGAGATGGGTGAAGAAGACGATGATGAAAATTCCTCAGGCAGTCTTGCTGATATAACGATACATGATGATGAAGTGAACTTGAGATTTCTCATCTGCGGTGCACCTTCCACTGTTGACGAGTCATTGCTGAGATCATTGGAGGACGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGAAAGTTTAGTGCTCCCCCACCACCTCTTCAGGCAGCCGCTTTTTCTCGTGGAGTTGTGACCATGCGATGCGATATATCAACCTGTAGTTCTGCACATATCTCACTTTTGGTATCAGGCAGTGCACAAACTTTGTTTAGTGATCAGCTCCTGGAGAGTCATATTAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCATGCACACCTCAACAAAGAGGGGAACGAACAGAATATCTCTGAACCTCGCAGATCTGCATCAATTGCTTGTGGAGCAACAGTATTTGAAATTAGCATGAAGCTTCCTCAATGGGCTTTGCAGATATTGAGACAGCTAGCACCTGATGTTTCGTATCGAAGTTTAGTTGTACTTGGCATTGCTAGTATTCAGGGGCTGCCTGTAGCTTCTTTTGAGAAAGATGATGCTGAGCGCTTACTTTTCTTCTATCAAAGTTGTGAGAAAGATAGCTATACAAATAATATAGTTTTTAGCAACCCCCCTTGTTGGTTGAAACCACCCCCTCCTACTAGAAAGAGGTGTGAACCAAGCCAAGGAGATATCCCGGGCCCCGATGATGGTTTCTTTGCAGGGGAAGGTGCTGTTCGGAAAGTAGACGAGGAGGAAAAGGATAGAAAAATGGTGAATGGGACTAGCACACCCTTAACTCCAGCTAGGCAAAGATTAAAAGTATCTGCAATGAGGCCTATTCCTCATGTACATCGCCATAGGCTGACATCTTTTTATGGGCCTTTTGAGACAAATGGTTTTGATGGTGCCCAAGTTGAGGCTAATTTGCCTCTTGTTGCACCTACAAAACGCACTAGTATTGGATCAACTTCTGCAACACAGAGAAAATCATTTGCAGCCTCAGCTCAGTCTAAGCAGGTTATTTCATTAAACCCACTGCCTTTGAAGAAACATGGTTGTGGAAGAGGCCCAGTGCAGACTTGCTCCGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTTTGATTCTTCGTGGACATAGTCGATTGATTCCTCAGGGAGGGCTAACTGAGTTCCCTGATGCTATACTCAATGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTCTCAAAGATGCGCAATTACACATCCACCAATAGAATGACCGGTGTTGGAAACACACTCAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGAATATGTGGTGAGTGGGCTCATTTTGGCTGTGATAGAAGGCAGGGCCTTGGCGCGTTTAAGGATTATGCAAAAACAGATGGACTAGATTATATATGTCCTCATTGTAGTGTTACAAATTTAAAAAAGAAACAAAGTATTGCTAATGGGTATTCTCAAGGGTCAATGTTGTCGCGACCCCTTTGA 2343 0.4324 MFQFHPQASTKQTCTLLAVTCGTSFEQQKPSQNHHNYPFPELVSVGRLEVQTLSNPEKEQFCKILESYQPNIVYLQGEQLANGEVGSLVWQGVELSTPEAITELFGPTLPTAVYLEIPNGKSFAEALHFKGIPYVIYWRNIFSCYAACHFRQAFLSVVQSSSTHTWDAFHLALASFELYCSQNNQVLPGDSHDTNCEMGPHLLGNHLQINVDPPEMGEEDDDENSSGSLADITIHDDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTLFSDQLLESHIKNEIIEKSQLVHAHLNKEGNEQNISEPRRSASIACGATVFEISMKLPQWALQILRQLAPDVSYRSLVVLGIASIQGLPVASFEKDDAERLLFFYQSCEKDSYTNNIVFSNPPCWLKPPPPTRKRCEPSQGDIPGPDDGFFAGEGAVRKVDEEEKDRKMVNGTSTPLTPARQRLKVSAMRPIPHVHRHRLTSFYGPFETNGFDGAQVEANLPLVAPTKRTSIGSTSATQRKSFAASAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHSRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLDYICPHCSVTNLKKKQSIANGYSQGSMLSRPL* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1039 780 SMART bright_3 595 699 IPR001606 GO:0003677
Lan9g1039 780 SMART ARID_2 591 694 - -
Lan9g1039 780 CDD PHD_ARID4_like 704 755 - -
Lan9g1039 780 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 770 - -
Lan9g1039 780 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Lan9g1039 780 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Lan9g1039 780 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Lan9g1039 780 Gene3D - 592 697 IPR036431 GO:0003677
Lan9g1039 780 CDD ARID 596 694 - -
Lan9g1039 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 761 IPR013083 -
Lan9g1039 780 SUPERFAMILY FYVE/PHD zinc finger 690 758 IPR011011 -
Lan9g1039 780 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 770 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1039 Lan-Chr9 17614646 17623132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1039 4 769 ARID Transcription Factor Family AT3G43240 59.638 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan9g1039 ARID 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1039 - - gmx:100820590 1377.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g1039 9 17614646 17623132 Lan2g0864 2 18960960 18973605 LSH