Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1031 ATGGATTCAATCCAATCCTTCAAGGGCTACGGTAAAGTAGATGAGGTGGAGCAGCAAGCTTTTCAGAAGAAGACACGTAAGCGTCTTATAATCCTGATAGTCTCATCAATAGTGCTATTAACGGTGATCGTAGCTGCTGTAGCAGGAATTATCATACACAAGCGCAACACCTCATCATCTTCTTCTTCTAACTCGGTTCCCCAGCCCGAGTTAACTCCGGCCGCGTCACTCAAAGCGGTTTGCGACGTGACTCAGTTCCCTAACTCATGCTTCTCCGCTATTTCCTCACTCCCGAATGCGAACACCACAGATCCTAAACTACTCTTCAAACTCTCTCTTCATGTCGCCATTGATGAAGTTTCGAAGCTTTCTAGCTTCATTTCAAAGCTTCGTGACAATGAGAAAATCGATCCACTGCTTCAGAAAGCAATTGATGTGTGCGGAACGGTGTTCGAAGACGCGCTGGATCAACTCAATGATTCGATCTCTTCGATTGGAAACTCCGGCGCCGGGAGAGTGTTACCGTCGGCGGATATCAGCGACGTGGAAACTTGGCTAAGCGCTGTGATGACGAACCAGGAGACATGCATCGACGCCGTCGATGAACTGAACTCCACCGCCTCGCGAGGTGTTCTCAGTGAACTGGAAACCGCCACGAGAAACTCCACCGAGTTCGTTAGCAACAGTTTAGCCATTGTGACGAGAATCCTAGGGCTTCTCTCGAGGTTCGACGCGCCGATTCAGAACCGGAGGCTGTTAGGGTTTGAAGAATCGGAGTTTCCGGCGTGGATAGGGTTGGCGGAGAGGAGGCTTCTGGAGACGAACGAGACGGCGTCGGTGGACGTGGTGGTGGCGAAAGATGGGAGTGGACAGTACAAGACGATAGGGGAAGCGTTGAAGTTGGTAAAGAAAAAGAGTTTGAAGAGATTGGTGGTGCATGTGAAGGAAGGGACTTATGTTGAAAACATTGATTTAGATAAGAATTCATGGAATGTGATGATTATCGGTGACGGCAAGGATAAGACCATAGTCTCCGGTAGCCGGAACTTCAAGGATGGCACCCCAACTTTTGAGACCGCCACTTTCGCTGTGAAGGGAAAGGGATTCATTGCCAAAGACATAGGCTTCCACAACACTGCAGGTGCAGAAAAGCACCAGGCTGTGGCATTACGATCTGGTTCGGATCAATCTGTCTTCTACAGGTGCTCATTTGTGGGCTTCCAGGATACTCTCTATGCTCATTCCAACCGCCAATTCTACCGCGACTGTGACATTACAGGCACAATTGACTTCATATTTGGGAACGCGGCTGTTGTGTTTCAAAATTGCAAAATCATGCCTAGGCAGCCAATGTCAAACCAGTTCAACACCATCACAGCACAGGGCAAGAAGGACCCCAACCAGAACACTGGGATTGTAATTCAGAAATCAACAATCACTACTCTTGATAATGACATTCTCACAGCTCCAACATACCTTGGCAGGCCTTGGAAAGATTTCTCCACCACTATCATCATGCAAACTGATATTGGGTCATTCTTGAAACCAGTGGGTTGGATTAGTTGGGTCCCTAATGTGGATCCCGTAAGCACCATATCTTATGCTGAATACCAGAATAGTGGGCCAGGAGCAGATGTGTCCCAAAGGGTTAAATGGGCTGGTTATAAGCCCACTCTCACAGATGATGAGGCAGTGAAGTTCACAGTGCAGACCTTTATCCAAGGCCCAGAGTGGTTGCCAGATACTACTGTGGAGTTTGAGTCCACCTTGTGA 1773 0.4834 MDSIQSFKGYGKVDEVEQQAFQKKTRKRLIILIVSSIVLLTVIVAAVAGIIIHKRNTSSSSSSNSVPQPELTPAASLKAVCDVTQFPNSCFSAISSLPNANTTDPKLLFKLSLHVAIDEVSKLSSFISKLRDNEKIDPLLQKAIDVCGTVFEDALDQLNDSISSIGNSGAGRVLPSADISDVETWLSAVMTNQETCIDAVDELNSTASRGVLSELETATRNSTEFVSNSLAIVTRILGLLSRFDAPIQNRRLLGFEESEFPAWIGLAERRLLETNETASVDVVVAKDGSGQYKTIGEALKLVKKKSLKRLVVHVKEGTYVENIDLDKNSWNVMIIGDGKDKTIVSGSRNFKDGTPTFETATFAVKGKGFIAKDIGFHNTAGAEKHQAVALRSGSDQSVFYRCSFVGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIMPRQPMSNQFNTITAQGKKDPNQNTGIVIQKSTITTLDNDILTAPTYLGRPWKDFSTTIIMQTDIGSFLKPVGWISWVPNVDPVSTISYAEYQNSGPGADVSQRVKWAGYKPTLTDDEAVKFTVQTFIQGPEWLPDTTVEFESTL* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1031 590 ProSitePatterns Pectinesterase signature 1. 306 325 IPR018040 -
Lan9g1031 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 237 IPR035513 -
Lan9g1031 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 237 IPR035513 -
Lan9g1031 590 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 234 IPR006501 GO:0004857
Lan9g1031 590 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
Lan9g1031 590 PANTHER PECTINESTERASE 1-RELATED 8 587 - -
Lan9g1031 590 SUPERFAMILY Pectin lyase-like 277 587 IPR011050 -
Lan9g1031 590 Pfam Plant invertase/pectin methylesterase inhibitor 77 232 IPR006501 GO:0004857
Lan9g1031 590 Pfam Pectinesterase 281 575 IPR000070 GO:0030599|GO:0042545
Lan9g1031 590 PANTHER PECTINESTERASE 8 587 - -
Lan9g1031 590 SMART PMEI_2 72 232 IPR006501 GO:0004857
Lan9g1031 590 Gene3D - 275 590 IPR012334 -
Lan9g1031 590 CDD PMEI-like_3 79 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1031 Lan-Chr9 17556951 17559855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1031 1 584 Carbohydrate Esterase AT1G53840 59.459 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1031 - - lang:109360530 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0588 11 4675954 4679210 Lan9g1031 9 17556951 17559855 LSH
Lan9g1031 9 17556951 17559855 Lan2g0869 2 19052721 19059422 LSH