Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1030 ATGACCAACATCAAACAAGTCTTAGCCGGAATCAAATATTCCGGCAAGAACAAAAAGAAGCTCCTCTTATCTCTCTTTGTCACTCTTCTTCTTGTTACCACCGTTGTTGCCATTGTTGCCGGAGTTAACTCTCACAAGAACTCCAACAACAACAACAACAATGCTTCCTCTTCACTCTCACTCTCTCACCATTCCCACACCATAATCAAAAGTGCATGCAGCTCCACATTCTACCCTGAACTATGCTTCTCAGTAATATCATCAGAACCAGGTGTTACTCACAAAGTTTCCACCCACAAAGATGTTATAGAATTGTCCTTAAACATTACCACAAGAGCCGTTGAACACAACTTCTTCATAGTAGAGAATCTCATAAAAACACAAAAGGGTCTCACTGAGAGAGAGAAAACAGCACTCCATGATTGCTTAGAGAACATAGATGAAACACTTGATGAACTGAAACAAGCTCATGAGGATCTTCAATTTTATCCTAACAAGAAGACACTGTATCAGCATGCTGATGATCTTAAAACTGTTATAAGTTCTGCCATTACTAACCAAATTACTTGCTTGGATGGGTTCTCGCATGAAGATGATGATAAGAAGGTGAGGAAGGTTCTGGAAGAAGGGCAGGTTCATGTGGAACACTTGTGCAGTAATGCTTTGGCTATGACAAAGAATATGACTGATAAGGATATAGCTAACTACGAGCAGAAGATGATGGCCGTCGGAAAGAACAACAGGAAGCTGATGGAGGAGGAGGACGGCGAGGTTAAGTGGCCGGAGTGGGTTTCTACCGGGGACAGGAAGCTTTTGCAGGCGGAAACAGTGAAGGCAGACGTGGTGGTGGCAGAAGATGGTAGTGGGGACTTCAAGACGGTGTCGGCGGCGGTGGCTGCTGCACCTGAGAAGAGCAAGAAGAGGTTTGTGATTAGGATTAAAGCAGGGGTTTATAGAGAGAATGTGGAAGTGGGAAAGAAGAAGACAAATATCATGTTCTTGGGTGATAGTAGAACAAATACTATTATCACTGGTAGCAGAAATGTTATTGATGGCACCACAACCTTCCACTCTGCCACTGTCGCCATAGTTGGTGAACAATTTCTAGCTAGAGATATAACATTTCAAAACACAGCTGGTCCCTCAAAGCACCAAGCTGTGGCCCTAAGAGTTGGTGCTGATTTCTCAGCCTTCTATAATTGTGACATATTAGCATACCAAGACACTCTCTATGTCCACAAAAATAGACAATTCTTCATAAACTGTCTCATAGCAGGAACAGTAGATTTCATCTTTGGTAATTCAGCTGTAGTGTTCCAAGATTGTGATATCCATGCTAGGCTTCCTGATTCAGGCCAAAAGAACATGGTCACAGCACAAGGAAGAGTTGATCCTAACCAAAACACTGGCATTGTAATACAAAAATGTAGGATTGGTGCAACCCAAGATTTAGACCCTGTGAAGAAAAATTTCCCTACATATCTTGGTAGGCCTTGGAAGGAATATTCTAGAACTGTGATCATGCAAACAATAATAAGTGATGTGATTGAACCTGTTGGGTGGCATGAGTGGAATGGAAACTTTGCTTTGGATACTTTGGTTTATAGAGAGTATCAGAATACTGGGCCTGGTGCTGGAACTTCAAAGAGGGTTGCATGGAAAGGGTTTAAGGTTATTACTAGTGATGCTGAGGCCCAGGCTTTTACTACTGGAAGCTTCATTGCGGGCTCTAGTTGGTTGGGCTCTACGGGCTTCCCTTTCTCACTTGAGCTGTAA 1776 0.4274 MTNIKQVLAGIKYSGKNKKKLLLSLFVTLLLVTTVVAIVAGVNSHKNSNNNNNNASSSLSLSHHSHTIIKSACSSTFYPELCFSVISSEPGVTHKVSTHKDVIELSLNITTRAVEHNFFIVENLIKTQKGLTEREKTALHDCLENIDETLDELKQAHEDLQFYPNKKTLYQHADDLKTVISSAITNQITCLDGFSHEDDDKKVRKVLEEGQVHVEHLCSNALAMTKNMTDKDIANYEQKMMAVGKNNRKLMEEEDGEVKWPEWVSTGDRKLLQAETVKADVVVAEDGSGDFKTVSAAVAAAPEKSKKRFVIRIKAGVYRENVEVGKKKTNIMFLGDSRTNTIITGSRNVIDGTTTFHSATVAIVGEQFLARDITFQNTAGPSKHQAVALRVGADFSAFYNCDILAYQDTLYVHKNRQFFINCLIAGTVDFIFGNSAVVFQDCDIHARLPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATQDLDPVKKNFPTYLGRPWKEYSRTVIMQTIISDVIEPVGWHEWNGNFALDTLVYREYQNTGPGAGTSKRVAWKGFKVITSDAEAQAFTTGSFIAGSSWLGSTGFPFSLEL* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1030 591 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Lan9g1030 591 CDD PMEI-like_3 71 229 - -
Lan9g1030 591 SUPERFAMILY Pectin lyase-like 276 589 IPR011050 -
Lan9g1030 591 PANTHER PECTINESTERASE 16 590 - -
Lan9g1030 591 Pfam Pectinesterase 280 576 IPR000070 GO:0030599|GO:0042545
Lan9g1030 591 Gene3D - 274 591 IPR012334 -
Lan9g1030 591 PANTHER PECTINESTERASE 16 590 - -
Lan9g1030 591 Coils Coil 139 159 - -
Lan9g1030 591 Pfam Plant invertase/pectin methylesterase inhibitor 68 224 IPR006501 GO:0004857
Lan9g1030 591 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 229 IPR035513 -
Lan9g1030 591 ProSitePatterns Pectinesterase signature 1. 305 324 IPR018040 -
Lan9g1030 591 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 229 IPR035513 -
Lan9g1030 591 Coils Coil 233 253 - -
Lan9g1030 591 TIGRFAM PME_inhib: pectinesterase inhibitor domain 58 228 IPR006501 GO:0004857
Lan9g1030 591 SMART PMEI_2 64 224 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1030 Lan-Chr9 17547567 17552376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1030 16 591 Carbohydrate Esterase AT3G14310 69.661 0.0 820
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0869 2 19052721 19059422 Lan9g1030 9 17547567 17552376 LSH