Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1021 ATGGAGGCTTCTATGCAAGGAGGGGTGAAAGGGTTTTCTGATAGCAGAGAAGAAGAGGAGGAAGAAGAAGCAGCAATAGAAGAAATCATCACAAGAGAAGAAAGCAGCAGCAGCAGGTTACACCATCAAAAAGAAGATTATGCAGCAGCAGCTTCTTCCAACTTCATGAATCATCAACAAAAAAAGCAGATAGATTTCATGGACTTGTCACTTGGAGGGAGCAACAACAAAGATATTATAAACATGAGTAATGGTGAAGCCAATTTGCAACAAGGGTCTCAATCTTCACAGGCTATTGTAACTGAGAAAGAGCACATGTTTGATAAAGTAGTGACACCAAGTGATGTAGGAAAGCTGAACAGGTTGGTGATACCAAAACAGCATGCTGAGAAGTACTTCCCCCTTGATTCAACCTCAAATGAGAAAGGCCTTTTGCTCAATTTTGAAGATAGGAGTGGGAAATTGTGGAGGTTCAGGTACTCTTATTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAAAAGAAGCTTGATGCTGGTGACATTGTCTCGTTCCAGCGCGGCGTTGGCGATCTTTACAGGCATAGGTTGTTCATTGATTGGAGGAGAAGGCCTGATCAATATTATGGTGTACCTGATCCTAACTCAGCTACACTTATCACTCCTTTGTTTCTTCCAAATCAGCCACACTTGTCTCAGTACTCTATTAGATGGGGTGGTAGATTTTACTCCCTACCTCCACCAACACAACAACCAAGGCATCACCAACATGAGCATATTCAGTACCTCAATCACAACAATATGTACCCCTTTCAGCACCTTGGTGGTGGTGGTGGTGGTGGAAGTGGAAGTCATCACTACTTGAACAACTACAATGAGGTGAGTAATTCAGGATCTGGCTCACTCTATTACCTGAAATCAACAACACCCTCAATGCAAATAACTAACCATCAGAGCTTTATGACAAGGCAGCAACAACATGAAGGAGGAGGCGGTAATAATATTGCTCCTGTGATCATTGATTCAGTGCCTGTTTCTCATCATCATCAACAACAACAACAACACCACCATGGGGATTATAAGAATGGTTCTAGTAATACTAATGGAACAGGAAAAAGGCTAAGGCTATTTGGAGTGAACATGGAATGTGGTTCTTCACCATCAGAAGACTCCAAATGTTGCAGTATACCACATGCCTCTTCTTCTATGCCACCAGTTTCATCATCAGCAAGGTTTGGAGATAATAAAAGAAGGGAAGCTTCAATCTTTGATTTGGACCCTTCTTTGCAATACCATAGGCAGTGA 1326 0.4238 MEASMQGGVKGFSDSREEEEEEEAAIEEIITREESSSSRLHHQKEDYAAAASSNFMNHQQKKQIDFMDLSLGGSNNKDIINMSNGEANLQQGSQSSQAIVTEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRSGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLYRHRLFIDWRRRPDQYYGVPDPNSATLITPLFLPNQPHLSQYSIRWGGRFYSLPPPTQQPRHHQHEHIQYLNHNNMYPFQHLGGGGGGGSGSHHYLNNYNEVSNSGSGSLYYLKSTTPSMQITNHQSFMTRQQQHEGGGGNNIAPVIIDSVPVSHHHQQQQQHHHGDYKNGSSNTNGTGKRLRLFGVNMECGSSPSEDSKCCSIPHASSSMPPVSSSARFGDNKRREASIFDLDPSLQYHRQ* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1021 441 MobiDBLite consensus disorder prediction 395 441 - -
Lan9g1021 441 Gene3D - 100 217 IPR015300 -
Lan9g1021 441 MobiDBLite consensus disorder prediction 352 379 - -
Lan9g1021 441 CDD B3_DNA 105 194 IPR003340 GO:0003677
Lan9g1021 441 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 46 417 IPR044800 GO:0003700
Lan9g1021 441 MobiDBLite consensus disorder prediction 364 379 - -
Lan9g1021 441 MobiDBLite consensus disorder prediction 419 441 - -
Lan9g1021 441 ProSiteProfiles B3 DNA-binding domain profile. 107 212 IPR003340 GO:0003677
Lan9g1021 441 Pfam B3 DNA binding domain 107 211 IPR003340 GO:0003677
Lan9g1021 441 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 46 417 - -
Lan9g1021 441 MobiDBLite consensus disorder prediction 1 41 - -
Lan9g1021 441 MobiDBLite consensus disorder prediction 395 416 - -
Lan9g1021 441 SUPERFAMILY DNA-binding pseudobarrel domain 103 212 IPR015300 -
Lan9g1021 441 SMART B3_2 107 212 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1021 Lan-Chr9 17257480 17259980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1021 100 393 RAV Transcription Factor Family AT2G46870 47.841 2.79e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan9g1021 B3 1.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1021 - - gsj:114390989 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0818 4 10196289 10198795 Lan9g1021 9 17257480 17259980 PCT
Lan16g1134 16 18407967 18410472 Lan9g1021 9 17257480 17259980 PCT
Lan9g1021 9 17257480 17259980 Lan4g0818 4 10196289 10198795 PCT
Lan9g1021 9 17257480 17259980 Lan16g1134 16 18407967 18410472 PCT