Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1018 ATGGCTCCATCATATGAAACCAATAAGGGTACTGAAGCCAACAATCTTAAACAAGAAAGGCATGTCCATGAAGAACAAGAAGATGGCATTGTTTTTGCTCTAAAATTATGTAGTTCTGTGGTGTTTCCACTTGCAGTCCGGTCTGCAGTTGAGCTTGGTATCTTCGACATCTTAGCCAAAGCTGGTGTCGAAGGTACCAAGCTATCTGCAGAGGACATTGCTACTAAGATTGGTAGCAAGAACCCTGAAGCACCAACAATGCTTGATAGAATTCTGAGGCTGTTGACTAGTCACTCTATGTTATATTGCTCCCTTGTTCATGAAAATGATCAAGAAGGAGCTCAGAGGCTATATAGTCTCACCCCTAACTCCAAATATTTTGTGACCGATGCTGATGGTGTTTCTTTTGGAGCCACCTTGAACTTAACTTTGGACAAGGTCTTCTTGGGAAGCTGGACGGAAATGAAAGGAGCAATCCTTGAAGGAGGTATACCATTCAACAGGGTTTATGGCATGCATGCATTTGAGTATCCAATTGTGGATCCAAGGTTCAATGATGTTTTCAACAAAGCTATGGTCAATTCTACAACTATAGTTATGAAAAGAGTTCTTGAATTTTACAAAGGTTTTGATCACATTAATAAATTGGTAGATGTTGGTGGTGGTCTTGGGATCAATCTCAATCTCATTACTTCAAAATATCCTCATCTCCATGGTATTAATTTTGACTTGCCTCATGTCATAGAACATGCCCCTACCTATGCCGGCGTGGAGCACGTGGGAGGAGATATGTTTGAGAGTGTTCCTCACGGAGATGTCATTTTTATGAAGTGGATAATTCACGATTGGAGTGATGAGCACTGCTTGAAGTTGTTGAAGAATTGCCATAAAGCAACCCCAGATGATGGAAAAGTGATTGTTGTGGATTCAATTCTCCCTGTTATTCCAGAAGCTACAGCTACAGCCAAAAGTGGTTTTCAAGCTGATATTTTAATGATGGCTCAAAACCCAGGAGGGAAAGAACGAACCCAACATGAATTCATTAAATTGGCAACAAATTCTGGATTTGCTGGTGTTAGATTCATTGGATCAATTTCTGGCATCTGGGTTATGGAGTTCTTCAAGTAG 1128 0.406 MAPSYETNKGTEANNLKQERHVHEEQEDGIVFALKLCSSVVFPLAVRSAVELGIFDILAKAGVEGTKLSAEDIATKIGSKNPEAPTMLDRILRLLTSHSMLYCSLVHENDQEGAQRLYSLTPNSKYFVTDADGVSFGATLNLTLDKVFLGSWTEMKGAILEGGIPFNRVYGMHAFEYPIVDPRFNDVFNKAMVNSTTIVMKRVLEFYKGFDHINKLVDVGGGLGINLNLITSKYPHLHGINFDLPHVIEHAPTYAGVEHVGGDMFESVPHGDVIFMKWIIHDWSDEHCLKLLKNCHKATPDDGKVIVVDSILPVIPEATATAKSGFQADILMMAQNPGGKERTQHEFIKLATNSGFAGVRFIGSISGIWVMEFFK* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1018 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 373 IPR029063 -
Lan9g1018 375 PANTHER O-METHYLTRANSFERASE 1 375 IPR016461 GO:0008168
Lan9g1018 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 34 375 IPR016461 GO:0008168
Lan9g1018 375 Gene3D - 10 127 IPR036388 -
Lan9g1018 375 Pfam O-methyltransferase domain 152 356 IPR001077 GO:0008171
Lan9g1018 375 SUPERFAMILY "Winged helix" DNA-binding domain 25 131 IPR036390 -
Lan9g1018 375 Gene3D Vaccinia Virus protein VP39 128 375 IPR029063 -
Lan9g1018 375 MobiDBLite consensus disorder prediction 1 21 - -
Lan9g1018 375 PIRSF O-mtase 11 375 IPR016461 GO:0008168
Lan9g1018 375 Pfam Dimerisation domain 45 96 IPR012967 GO:0046983
Lan9g1018 375 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1018 Lan-Chr9 17197841 17201293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1018 18 375 Monolignol Biosynthesis Gene Families AT5G54160 53.073 2.23e-140 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1018 K13066 - gmx:100789402 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0610 11 4895070 4897493 Lan9g1018 9 17197841 17201293 LSH
Lan4g0814 4 10139126 10141551 Lan9g1018 9 17197841 17201293 PCT
Lan9g1018 9 17197841 17201293 Lan4g0814 4 10139126 10141551 PCT