Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1017 ATGGAGAGGTTTCAAGAACCTGGCCCCCTCAATTCCTGTTTCACAGGTGACCATTTTGAAGTGAATTCTTTAGAGCAACAACGTTTGGTTGATGCAGAAAGCTTCAGATTTGTGGAGAATGAAGAACAATTTTTGATATCAAGCTTAGAAGATAACATGCCATTCTTGCAGATGCTTCAGAGTGTGGAATCTTCTCCACAGTTTTTCCCTTTAAAAGAGCCAAGTTTTAGAACACTTCTAAGCTTACAACACATGAAGAAACAACAACCATGGGAAAACATAGCCTACATTCCAAGAATGGATACTCAAATTCAAGCAGCAATGGAGCTTGAAAGCTGCGTAACACATGACATATTGGAGATGCAGTCACCAGTGAAATCTGAAAGCAATAATGAACTCCATCAACAACACACACCTTCAGCTGCTTCATGTGTTGTTGAGAAAGTGATGAGTTATGATGAGTGCAACCATGCTATTATTGCTAATGCTAACACACAATCATCATGTCACAAGACTCAGATAGCTACAAGAGAAAGGAGGAAAAGAAAGAGAACAAGACCAACCAAGAGCATAGAAGATGTAGAGAATCAACGCATGACTCACATTGCAGTTGAACGCAATAGGAGACGCCAAATGAATGACCATCTCAGTGTTCTGAGGTCCCTCATGCCCTCTTCTTATATTCAAAGGGGTGACCAAGCTTCTACTATTGGAGGAGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAATCACTTGAAGCACAAAAAATGGTGAGGAAGAATGAAGAGGTTGGTAATGGTAATAACAATAATAATAATAGTAATGGTTCTTCTTCAATTGAGTTGTGTAAGCCACCAGCATCATTCTTATCTAGTGAAGAAGCAAAGTTTGGGGATGAGGTGAGGACAGAAATGAAGTCAAATTTAGGGCATATAGAAGTCACATTGATTCAAACCCATGTTAACTTGAAAATTGAGTGCCAAAGGAAGCATGGTCAATTGATAAAAGTCATTGTTGCTTTGGAAGATCTTAGACTAACTATTCTGCACCTCAACATTACATCCACTGTGACTTCTGTCCTCTACTCTCTCAATCTCAAGATTGAAGAAGACTGTAAACTAGGTTCAGCAAATGACATTGCAGATGCAGTTCATCAAATATTAAGCTTCATTAATGGTAGCTAG 1191 0.3904 MERFQEPGPLNSCFTGDHFEVNSLEQQRLVDAESFRFVENEEQFLISSLEDNMPFLQMLQSVESSPQFFPLKEPSFRTLLSLQHMKKQQPWENIAYIPRMDTQIQAAMELESCVTHDILEMQSPVKSESNNELHQQHTPSAASCVVEKVMSYDECNHAIIANANTQSSCHKTQIATRERRKRKRTRPTKSIEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYIQRGDQASTIGGAIDFVKELEQLLQSLEAQKMVRKNEEVGNGNNNNNNSNGSSSIELCKPPASFLSSEEAKFGDEVRTEMKSNLGHIEVTLIQTHVNLKIECQRKHGQLIKVIVALEDLRLTILHLNITSTVTSVLYSLNLKIEEDCKLGSANDIADAVHQILSFINGS* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1017 396 Coils Coil 244 264 - -
Lan9g1017 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 259 IPR036638 GO:0046983
Lan9g1017 396 MobiDBLite consensus disorder prediction 264 282 - -
Lan9g1017 396 Pfam Helix-loop-helix DNA-binding domain 197 248 IPR011598 GO:0046983
Lan9g1017 396 CDD bHLH_AtFAMA_like 199 266 - -
Lan9g1017 396 PANTHER TRANSCRIPTION FACTOR BHLH70 23 395 - -
Lan9g1017 396 SMART finulus 202 253 IPR011598 GO:0046983
Lan9g1017 396 Gene3D - 188 264 IPR036638 GO:0046983
Lan9g1017 396 MobiDBLite consensus disorder prediction 263 282 - -
Lan9g1017 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 247 IPR011598 GO:0046983
Lan9g1017 396 PANTHER MAX DIMERIZATION, MAD 23 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1017 Lan-Chr9 17172866 17176146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1017 58 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 41.270 1.90e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan9g1017 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1017 - - gmx:100789928 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0611 11 4904858 4907849 Lan9g1017 9 17172866 17176146 LSH