Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1014 ATGTCTCTAGGAGAGGTTGCTTGCAGTTACTCGCTCACGATTCTTCACGATGATAACATTTTTGTTACTGGTGATAAGATCTCATCCTTGTTGAAAGCAGCAAATGTTGAAGTTGAAGCTTATTGGCCAAGTTTATTTGCTAAGCTTGCTGAGAAGCGGAGTATTGGGGATTTGATATCGAGTGCGGCAGGAGGTGGAGCTCCCGTCGCTGTTGCAGCCCCAGCAGCTGCTGTAGGTGCTGGCAGTGCCGCTGCCGCTTATGCAGCTCGTACTGAGGAGAAGGAAGAACCAAAGGCAGAGAGTGATGACAAAATGGGATTCAGCTTGTTTGATTAG 336 0.4792 MSLGEVACSYSLTILHDDNIFVTGDKISSLLKAANVEVEAYWPSLFAKLAEKRSIGDLISSAAGGGAPVAVAAPAAAVGAGSAAAAYAARTEEKEEPKAESDDKMGFSLFD* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1014 111 CDD Ribosomal_P1 5 110 - -
Lan9g1014 111 Hamap 50S ribosomal protein L12 [rpl12]. 6 111 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lan9g1014 111 MobiDBLite consensus disorder prediction 91 105 - -
Lan9g1014 111 Gene3D - 1 62 IPR038716 -
Lan9g1014 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 102 - -
Lan9g1014 111 MobiDBLite consensus disorder prediction 91 111 - -
Lan9g1014 111 Pfam 60s Acidic ribosomal protein 22 110 - -
Lan9g1014 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1014 Lan-Chr9 17138887 17140455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1014 1 111 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 48.649 3.61e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1014 K02942 - egr:104437298 122.094