Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1011 ATGTCAGAAAACATGAGTATATCTGTAAATGGACAATCTCAAGTCCCTCCTGGCTTCCGTTTTCATCCAACTGAAGAAGAACTTCTTCAGTACTACTTGAGGAAAAAGGTCTCTTATGAGAAGATTGACCTTGATGTGATTCGTGATGTTGATCTCAACAAGCTTGAGCCTTGGGACATACAAGAGAAGTGCAAAATAGGAACCACTCCACAAAATGATTGGTACTTTTTCAGCCACAAAGACAAGAAGTATCCTACCGGGACACGCACCAATCGTGCCACTGCTGTAGGGTTTTGGAAAGCCACCGGACGTGACAAGGTGATATATAGTAATGGGAAGAGGATTGGAATGAGGAAGACTCTAGTTTTCTACAAAGGTCGAGCACCTCATGGCCAAAAATCTGATTGGATCATGCATGAATATAGACTGGATGACAATAACTTCAACGACACCACTACTGTATCCAATGTGATCGGAGATGGAGGCCAAGAAGAAGGATGGGTGGTGTGTAGAATATTCAAGAAGAAGAACCATCTCAAAACCCTAGACAGTCCCTTACCCTCTTCAATCTGTGGGGAAGGAAGAAGAAGCCATTTGTTTGATTCTTGTGATGAGGGAGCATTGGAGCAAATTCTTCAACAAATGGGAAGGGACACTTGCAAGGAAGAGAACTACGAAGCCAAGAATTACAACTACGGAAGGTATTCCAGGCCATTTGACACAGGTATTAACAATAATGGAAACTACCATGATAACAGGTTCATGAAACTCCCAAGCCTAGAGAGTCCAAAATCCACTAGCATGGAGAGTCATCAAAATAACACTAATGATATTGATACTAATAATAATGGGTACCAGCCCATTATGCCAATACATATGGTCACAGAAAATGAAGGGTCATTCACAACACACCATGACCCCAACATGGTTCATCATAATCCATTGGAGGCATCATCATCATCAATGGTAGTAGGATCAGGTGGCCTTACCAACTGGGCAACCCTGGATAGACTTGTTGCTTCTCAACTGAATGGCCAAACTGATCAAACTTCTAGGCAACTGGCTTGCTTCAATGACCCTACCATAGGGTATTGCACTAGTGACCATGACCTTCAATTCCCTACCCTCCGGTCATCATCAAACACAAGTGCTGCTGCTTCTGCTTTCATTAGTCCTACACAGGATTACTCAAGTGAGATTGACCTATGGAACTTTGCTCAATCCACATCATCATTGTTATCATCATCCTCTGAAATAGTATGCCACGTGTCGAACACATCGGTGTAG 1287 0.4274 MSENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAVGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNFNDTTTVSNVIGDGGQEEGWVVCRIFKKKNHLKTLDSPLPSSICGEGRRSHLFDSCDEGALEQILQQMGRDTCKEENYEAKNYNYGRYSRPFDTGINNNGNYHDNRFMKLPSLESPKSTSMESHQNNTNDIDTNNNGYQPIMPIHMVTENEGSFTTHHDPNMVHHNPLEASSSSMVVGSGGLTNWATLDRLVASQLNGQTDQTSRQLACFNDPTIGYCTSDHDLQFPTLRSSSNTSAAASAFISPTQDYSSEIDLWNFAQSTSSLLSSSSEIVCHVSNTSV* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1011 428 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Lan9g1011 428 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Lan9g1011 428 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Lan9g1011 428 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 381 - -
Lan9g1011 428 MobiDBLite consensus disorder prediction 261 281 - -
Lan9g1011 428 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Lan9g1011 428 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1011 Lan-Chr9 17064835 17067011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1011 1 427 NAC Transcription Factor Family AT2G46770 54.318 3.98e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan9g1011 NAM 6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1011 - - ahf:112734309 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0617 11 4974087 4975909 Lan9g1011 9 17064835 17067011 LSH