Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1009 ATGTCTCAACAAAGGCAATTTCAGATGGTGGGTGGTAACAATTCAAACCAATATAATGACACAACATTTACCAAACTCTTTGTTGGAGGGTTAGCTTGGGAAACTCAGAGGGAAACAATGAGGAGGTACTTTGATCAATTTGGAGAGATCTTAGAAGCTGTTGTAATCACAGATAAGAATACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCAGAAGCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGGAGGAGAGCAAACTGCAATTTGGCATCTCTTGGTGCAAATAAGAATAGACCACCACCTCCACCGCATGGTTTTGGAAGGTTCAGGCCACCACCTGGACTGGTGGCACAACCTGCTTATCATGGTTCTTCATCTACATTTTTCTACCAACCCATTGGGCAAAACACATTTCCATATTCAACTTATGGATATTCTGGATATTCACAAGACACCTTGTATCCCACGGGCTATTATGGTGTCTATGGAGGCCAACATTTTTCACCTTACTATCCATCAGGGGCTGCTTCTGGTGCAGTTGGGTTGGTCCATAATATGTACCCTTACTATGGTCAATATGCACATACTAGCCAAGATCATGGTTTTGGAATTCAATACCCTCAAATGGCACAATTGCCAATTCTGCCTCAGCAGAATTATGGCTCTACAGGGATTTTGTCACTTCCTTCAATTGCATTACCATCTAGTACTACTACTAGTGCAGTTTCAGCAGCAACAATAACCGCAACCACAACCCCAATATCTCTAAGTGTGACAACATCAAAAGCTTCTGAAAAGGCCACTGAACAAAATTCTACATCACAAGGATAA 858 0.4219 MSQQRQFQMVGGNNSNQYNDTTFTKLFVGGLAWETQRETMRRYFDQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPPPPHGFGRFRPPPGLVAQPAYHGSSSTFFYQPIGQNTFPYSTYGYSGYSQDTLYPTGYYGVYGGQHFSPYYPSGAASGAVGLVHNMYPYYGQYAHTSQDHGFGIQYPQMAQLPILPQQNYGSTGILSLPSIALPSSTTTSAVSAATITATTTPISLSVTTSKASEKATEQNSTSQG* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1009 285 SUPERFAMILY RNA-binding domain, RBD 12 122 IPR035979 GO:0003676
Lan9g1009 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Lan9g1009 285 SMART rrm1_1 25 97 IPR000504 GO:0003723
Lan9g1009 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Lan9g1009 285 PANTHER - 1 270 - -
Lan9g1009 285 PANTHER BOULE-RELATED 1 270 IPR037366 GO:0003729
Lan9g1009 285 CDD RRM_RBM24_RBM38_like 24 99 - -
Lan9g1009 285 Gene3D - 1 108 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1009 Lan-Chr9 17031457 17034163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1009 20 100 C2H2 Transcription Factor Family AT2G19380 43.210 8.14e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1009 - - gmx:100786208 416.001