Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1008 ATGGGAAAGAAGGGAAGTAGTTCTTGGTTAACTGCTGTCAAAAGGGTATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTAGCAGAAGAAAAGAAGATTGTGATCAAGAAGAAGATGAAGAGAAGAGAGAGAAAAGAAGATGGATTTTCAGAAAGAATCATGAAACAGTGAGCACAAAACAAACTCCAATAAAGTTGAAGCATCATGTGGCTGCTGCAACAACAAATGCAAGTGTGGCCTTGAGGACAGACCAAGATCAGAAGCATGCACTTGCAATGGCTGTGGCCACCGCACAAGCCGCTGTAGCGGGTGCAAGGTTGACCAAGCCTAGTACTACTAATAATAATAATCATGTTAGGGAGCATTTTGCTGCTATTGTGATTCAAACTGCTTTTAGAGGATATTTGGCAAGAAGAGCGCTTCGTGCGCTTAAGGGATTGGTGAAATTGCAGGCTTTTGTAAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACCCTTAAATGCATGCAAGCTTTGGTTAGAGTACAAGCAAGGGTTCTCGGTCAACGCATAAGGCCTTCACTTGATGGGAGTAGAAAATCTACCTTCAGTGACACCACCAGCGTTTTGGAATCGCGGTATCTTCAGGACATGTCAGATAGGAAATCAGTATCAAGAGAGGGAAGCAGCATTGCAAATGATTGGGATGAAAGGCTGCACACAGTTGAAGAAGTTAAGGCTATGTTGCAGCAGAGGAAGGAAGCAGCTATGAAGCGAGAAAAGTCCTTGTCTCGAGCTTTTTCACAACAGATTGGGAGGAATGGGTGGACACCAACAATTGGGAATGAAGATGATATGGAAGAGAGGCCGAAATGGCTCGACCCGTGGATGTCTACAAAGCCATGGGAGGGCAGGGGACGAGCCTCAACTGATCAAAGAGACCCCATTAAGACCGTGGAAATAGACACTGCTCAGCCTTACTCATATCTAGGAGGAGCCAATTACAGAAGATCACATCCAAATTACCAATATAACCCAAACCACCAACAACAAAGACATTCCATTGCTTCCCCGATGCACAGAACCCACCAAAATGGATCAATGCAGCAATCCCCTGCCTCCCCATCTCCAGCAAAATCAAGACCCATCCAAATTCGGTCCGCAAGCCCTCGCTGCATTAGAGAAGACAGAACCTCCCAAACACCAAGCCTCAGGTCTACTTATCATTACACAGGGAATTTGTGTCAAATTTCCCAGGCTGGAACAAGTAATGGTGCTGCTGCTGCATTGCCTAATTACATGGCTGCAACTGAGTCTGCAAAGGCTAGAATTCGATCTCAGAGCGCGCCAAGGCAAAGGCCGTCAACACCAGAGAGAGACAGAGGAGCTGGATCAGTTAAGAAAAGGCTCTCTTTCCCGGCTCCAGATCCTTATAATGTAGGAGCTGATTATGGAAATTGTCGGCAGAATTTAAGGAGTCCAAGCTTCAAGAGTGTAGGTGCATCACATTTTGGTATTGAAAAGCAATCCAACTACTCTTCTTGCTGCACTGAGAGTATTAGTGGAGAGATTTCTCCTTTTTCAACCGGCGATCTTAGAAGGTGGTTCAGATGA 1599 0.4553 MGKKGSSSWLTAVKRVFRSPTKDSDKRSSRRKEDCDQEEDEEKREKRRWIFRKNHETVSTKQTPIKLKHHVAAATTNASVALRTDQDQKHALAMAVATAQAAVAGARLTKPSTTNNNNHVREHFAAIVIQTAFRGYLARRALRALKGLVKLQAFVRGHNVRKQAKMTLKCMQALVRVQARVLGQRIRPSLDGSRKSTFSDTTSVLESRYLQDMSDRKSVSREGSSIANDWDERLHTVEEVKAMLQQRKEAAMKREKSLSRAFSQQIGRNGWTPTIGNEDDMEERPKWLDPWMSTKPWEGRGRASTDQRDPIKTVEIDTAQPYSYLGGANYRRSHPNYQYNPNHQQQRHSIASPMHRTHQNGSMQQSPASPSPAKSRPIQIRSASPRCIREDRTSQTPSLRSTYHYTGNLCQISQAGTSNGAAAALPNYMAATESAKARIRSQSAPRQRPSTPERDRGAGSVKKRLSFPAPDPYNVGADYGNCRQNLRSPSFKSVGASHFGIEKQSNYSSCCTESISGEISPFSTGDLRRWFR* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1008 532 Gene3D - 121 173 - -
Lan9g1008 532 PANTHER IQ-DOMAIN 5-RELATED 1 532 - -
Lan9g1008 532 Coils Coil 234 254 - -
Lan9g1008 532 MobiDBLite consensus disorder prediction 18 45 - -
Lan9g1008 532 MobiDBLite consensus disorder prediction 434 467 - -
Lan9g1008 532 Pfam IQ calmodulin-binding motif 149 165 IPR000048 GO:0005515
Lan9g1008 532 Pfam IQ calmodulin-binding motif 125 143 IPR000048 GO:0005515
Lan9g1008 532 SMART iq_5 121 143 IPR000048 GO:0005515
Lan9g1008 532 SMART iq_5 144 165 IPR000048 GO:0005515
Lan9g1008 532 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 532 - -
Lan9g1008 532 MobiDBLite consensus disorder prediction 333 378 - -
Lan9g1008 532 MobiDBLite consensus disorder prediction 1 45 - -
Lan9g1008 532 Pfam Protein of unknown function (DUF4005) 384 485 IPR025064 -
Lan9g1008 532 MobiDBLite consensus disorder prediction 261 401 - -
Lan9g1008 532 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Lan9g1008 532 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1008 Lan-Chr9 17020570 17023536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1008 1 532 IQD Protein Family AT1G01110 54.417 1.11e-168 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1008 - - gmx:100786729 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0618 11 4997315 5000228 Lan9g1008 9 17020570 17023536 LSH