Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1006 ATGTCAGAACGTGTGGACAATGATGAACGTGTGGACTATGATGAAGAGAATTATATGGAAGAGACAGATGAGGATGTTGAAGAACAAATAGATGGTGATGAAGTGGATGAACATAGTGATGAAGATGTTGAAGGCATTGAAGAACATGAATATGAGGACTCAGTGGCAGAGGCTGGTGGGAAAGACCAATTGCCTGTTGCAGATAGAAGTGGCGTTGCTGCTGAGTCTCTAGAACCATCTTTCATTGATGAAGAAGAGAAAAAGAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTTTTCATTGGTGGGCTACCCCGGGATGTATGTGAAGATGACTTGAGGGAGTTGTGCGAGCTGATAGGTGATATTCATGAGGTGCGACTGATGAAAGACAGGGACACTGGAGAAGGCAAGGGTTATGCTTTTGTGTCTTTTAAAACAAGAGAGGAAGCACAAAAGGCCATTGAAGAGTTGCACAATAAGGAATTTAAGAGTAAAACTTTAAGGTGTTCACTGTCGGAGACAAAACAAAGATTGTTCATTGGTAATGTTCCAAAAAATTGGATTGAAGATGAGTTTAGGAAGGTCATTGAAGGTGTTGGTCCTGGAGTTGAAAACATCGAGCTCAAAAAGGATGCTCAAAATTCAAGCAAGAATCGAGGGTTTGCTTTTGTTGTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAAATGTCAAGTGCGAGTTTTAAGTTGGATGGTAATACCCCAACTGTCACATGGGCAGATCCAAAGATATCACCTGATCAGTCTGCTTCTTTACAGGTAAAGGCTCTTTATGTGAAAAACATACCTGAGAATACTAGTACTGAAGAACTGAAGGAGGTATTCTCTCATCATGGAGAAGTAACAAAAGTGGTCATGCCACCTAGCAGAGCTGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCTGAGAGGTCAAGTGCATTAAAGGCTACAAAAGATGGAGAGAAATATGAAATCAATGGCCAAGTTCTTGAGGTTGTTCTTGCTAAGCCTCAAACTGAGAGAAAACCAGATGGAGGTTATGCATATAATCCTGGTTTTCAACCAAATCACTTTTCACAACCTGCTTATGGTGGTGGCTTTGCTGGAAATCTTTATGGCTCTTCAGGAGGCGGATATGGTGTTGCTGCTGGTTTTCAACAGCCAGTGATATATGGTAGGGGTCCAATGCCTTCAGGAATGCAGATGGTTCCAATGGTATTACCAGATGGTCAAATTGGCTATGTCCTTCAACAACCTGGCGTACAGATGCCAGCTCCTCCCCGACCACGCAGAAATGATCGAAACAATGGTCCAAGTGGTCATTCAGGACGAGCGGGCGGTAGTAGCAGTGATGAAGGCAATCGTGGTGGTGGTCGAAGGTACCGACCCTATTAG 1443 0.4297 MSERVDNDERVDYDEENYMEETDEDVEEQIDGDEVDEHSDEDVEGIEEHEYEDSVAEAGGKDQLPVADRSGVAAESLEPSFIDEEEKKKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCELIGDIHEVRLMKDRDTGEGKGYAFVSFKTREEAQKAIEELHNKEFKSKTLRCSLSETKQRLFIGNVPKNWIEDEFRKVIEGVGPGVENIELKKDAQNSSKNRGFAFVVYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKISPDQSASLQVKALYVKNIPENTSTEELKEVFSHHGEVTKVVMPPSRAGGKRDFGFIHYAERSSALKATKDGEKYEINGQVLEVVLAKPQTERKPDGGYAYNPGFQPNHFSQPAYGGGFAGNLYGSSGGGYGVAAGFQQPVIYGRGPMPSGMQMVPMVLPDGQIGYVLQQPGVQMPAPPRPRRNDRNNGPSGHSGRAGGSSSDEGNRGGGRRYRPY* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1006 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Lan9g1006 480 PANTHER GEO13361P1-RELATED 2 478 - -
Lan9g1006 480 Gene3D - 3 181 IPR012677 -
Lan9g1006 480 Gene3D - 266 398 IPR012677 -
Lan9g1006 480 MobiDBLite consensus disorder prediction 9 51 - -
Lan9g1006 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 478 - -
Lan9g1006 480 SUPERFAMILY RNA-binding domain, RBD 272 372 IPR035979 GO:0003676
Lan9g1006 480 SUPERFAMILY RNA-binding domain, RBD 98 263 IPR035979 GO:0003676
Lan9g1006 480 MobiDBLite consensus disorder prediction 435 480 - -
Lan9g1006 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 353 IPR000504 GO:0003723
Lan9g1006 480 SMART rrm2_1 102 175 IPR003954 GO:0003676
Lan9g1006 480 SMART rrm1_1 182 259 IPR000504 GO:0003723
Lan9g1006 480 SMART rrm1_1 277 349 IPR000504 GO:0003723
Lan9g1006 480 SMART rrm1_1 102 175 IPR000504 GO:0003723
Lan9g1006 480 Gene3D - 182 262 IPR012677 -
Lan9g1006 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 346 IPR000504 GO:0003723
Lan9g1006 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Lan9g1006 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 249 IPR000504 GO:0003723
Lan9g1006 480 CDD RRM_SF 103 175 - -
Lan9g1006 480 MobiDBLite consensus disorder prediction 1 66 - -
Lan9g1006 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 263 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1006 Lan-Chr9 17002197 17006269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1006 103 421 Eukaryotic Initiation Factors Gene Family AT1G71770 26.146 3.40e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1006 K13161 - gmx:100790907 698.353