Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1000 ATGGAAGATTTGATCATATCTCCTTCCTCATCCTCTTCCCTTGTTTCACTCCCCAAAGAAAACCCATCAACCCTTCAACAAAAGCTTCAATTTTTAGTAGAGACCCAACCCGATTGGTGGGTCTATGCCATTTTTTGGAAGGCCAAAAACGATGACAAGGGAAACCTTTACTTATCTTGGGGAGAAGGCCATTTTCAAGGAACAAAAGAAACTTTCCCAAAACAACAACAACAACAACTACTTTCAAACACGTGCGCAAACAAGGACCAAAATGATGCTGAATGGTTCTATATCATGTCGTTGACTCGCACCTTTTCCATCACCAATGCTTCTTCATCTTCATCTTCCTCTCTACCAGGCAAGTCTTTCGCTTTAGGTTCTGTGCTTTGGTTAAATAACAAGCATGAGCTTCAATACTATAATTGTGAGAGAACAAAAGAGGCTCACATGCATGGAATCGAAACCTTAATTTGCATACCAACAACCAACGGGGTCATTGAATTAGGTTCCTATGACACCATCAAACAAAGTTGGGGTATTGTTCAACATTCCAAATCACTCTTTGGATCATCATCACTATCACCACCAGATCTTATGGACAAGGATAACAACAACAACAGCAACAATCACCTTAACCCGTCACAAACACAATTCTTTGATGTTCAAAACTTCTCATTCGCTGACATAGGCATATTTGCGGGTGTTCAACAAAATGAAGACACGACAAAAATAAATACACAAGAACAATCCAACAACAAGACGAACATTCGATCATCTTATGTTGATTCGGAGAATTCAGATTCCGATAACTGTATAATACTGGCAACGGAAAACACCTCAGAGAAGAAGAAAGCTATATTATTGCCTAAGAAGAGAGGAAGAAAACCTCTTCTGGGGCGCGAAACACCGGTGAATCATGTGGAAGCTGAGAGGCAAAGGAGAGAAAAATTGAACCATAGATTCTACTCGTTGAGATCGGTGGTGCCAAATGTTTCAAGAATGGATAAAGCTTCTCTTTTATCTGATGCTGTTGCTTACATCAAGGAGCTCAAAACAAAGATCAATGAGTTGGAAAAGGAGCATTGTAGCAATAAGAAGGTGAAGGTTGAAATGGCGGATACAATGGACAATAATAGCACAACAACAACTTCAACTGTGGTGGACCAAAATGGACCTAATAATCTTGAGGTTGATGTGAAAATGGTAGGGGATGATGCCATAGTGAGGGTTCAATCAGATAATGTGAACCACCCAGGTGCAAGGCTAATGAGTGTGTTGAGAGACTTGGATTTTCAGGTTCATCATGCTAGCATGTCTTGTGTTAATGATCTTATGCTTCTAGATGTTGTTATTAAAGCTACTAATATGATGAGAAGTGAAGAGGGTATTAAGTCAGCGATTCTCATGAGATTGAATCACTAA 1422 0.3966 MEDLIISPSSSSSLVSLPKENPSTLQQKLQFLVETQPDWWVYAIFWKAKNDDKGNLYLSWGEGHFQGTKETFPKQQQQQLLSNTCANKDQNDAEWFYIMSLTRTFSITNASSSSSSSLPGKSFALGSVLWLNNKHELQYYNCERTKEAHMHGIETLICIPTTNGVIELGSYDTIKQSWGIVQHSKSLFGSSSLSPPDLMDKDNNNNSNNHLNPSQTQFFDVQNFSFADIGIFAGVQQNEDTTKINTQEQSNNKTNIRSSYVDSENSDSDNCIILATENTSEKKKAILLPKKRGRKPLLGRETPVNHVEAERQRREKLNHRFYSLRSVVPNVSRMDKASLLSDAVAYIKELKTKINELEKEHCSNKKVKVEMADTMDNNSTTTTSTVVDQNGPNNLEVDVKMVGDDAIVRVQSDNVNHPGARLMSVLRDLDFQVHHASMSCVNDLMLLDVVIKATNMMRSEEGIKSAILMRLNH* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1000 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 350 IPR011598 GO:0046983
Lan9g1000 473 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 188 IPR025610 -
Lan9g1000 473 Gene3D - 299 366 IPR036638 GO:0046983
Lan9g1000 473 MobiDBLite consensus disorder prediction 241 263 - -
Lan9g1000 473 Pfam Helix-loop-helix DNA-binding domain 305 350 IPR011598 GO:0046983
Lan9g1000 473 SMART finulus 307 356 IPR011598 GO:0046983
Lan9g1000 473 Coils Coil 340 360 - -
Lan9g1000 473 MobiDBLite consensus disorder prediction 192 214 - -
Lan9g1000 473 PANTHER TRANSCRIPTION FACTOR BHLH14 1 471 - -
Lan9g1000 473 PANTHER MYC 1 471 IPR045084 GO:0003700|GO:0006355
Lan9g1000 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 363 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1000 Lan-Chr9 16934282 16936130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1000 1 471 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 32.337 5.76e-87 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan9g1000 bHLH-MYC_N 9e-46 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1000 - K13422 lang:109359482 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0621 11 5033306 5034822 Lan9g1000 9 16934282 16936130 LSH